Variant report

Variant	rs13277300
Chromosome Location	chr8:107062819-107062820
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:107043250..107045560-chr8:107060894..107062848,2	K562	blood:
2	chr8:107054893..107058550-chr8:107060735..107063239,3	K562	blood:
3	chr8:107044060..107046114-chr8:107059954..107062848,2	K562	blood:

Extended variants
information (count: 106 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:103)

rs_ID	r²[population]
rs10086055	0.84[ASN][1000 genomes]
rs10092927	0.92[EUR][1000 genomes]
rs10955407	0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10955408	0.84[ASN][1000 genomes]
rs10955409	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10955412	0.91[CHB][hapmap];0.81[JPT][hapmap];0.88[ASN][1000 genomes]
rs10955413	0.87[ASN][1000 genomes]
rs11781331	0.97[ASN][1000 genomes]
rs11782609	0.91[EUR][1000 genomes]
rs11786829	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11997513	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12541635	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12674846	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12677927	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12680670	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12681183	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13274603	0.95[CHB][hapmap];0.85[JPT][hapmap];0.89[ASN][1000 genomes]
rs1353450	0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1366969	1.00[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1429676	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1429681	0.84[ASN][1000 genomes]
rs1496180	0.90[JPT][hapmap]
rs1496181	0.84[ASN][1000 genomes]
rs1496182	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1496183	0.84[ASN][1000 genomes]
rs1603363	0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16873989	0.92[EUR][1000 genomes]
rs1817939	0.84[ASN][1000 genomes]
rs1835267	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1835268	0.82[ASN][1000 genomes]
rs1896918	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1896919	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2029878	0.84[ASN][1000 genomes]
rs2029879	0.84[ASN][1000 genomes]
rs2029880	0.84[ASN][1000 genomes]
rs2029881	0.94[EUR][1000 genomes]
rs2029882	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2059943	0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2115703	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2132471	0.93[EUR][1000 genomes]
rs2163124	0.84[ASN][1000 genomes]
rs2217391	1.00[AFR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2345070	0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2881036	0.89[ASN][1000 genomes]
rs2881037	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34177605	0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34872724	0.84[ASN][1000 genomes]
rs4416800	0.94[EUR][1000 genomes]
rs4734126	0.92[EUR][1000 genomes]
rs4734128	0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4734892	0.90[JPT][hapmap]
rs4734893	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs4734894	0.93[EUR][1000 genomes]
rs4734895	0.93[EUR][1000 genomes]
rs4734896	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4734897	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55639043	0.84[ASN][1000 genomes]
rs55729609	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55762012	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55811614	0.91[EUR][1000 genomes]
rs56352125	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56402027	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57607757	0.90[EUR][1000 genomes]
rs57715289	0.92[EUR][1000 genomes]
rs59123253	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs60482457	0.91[EUR][1000 genomes]
rs62525696	0.91[EUR][1000 genomes]
rs62525736	0.93[EUR][1000 genomes]
rs62527360	0.84[ASN][1000 genomes]
rs62527363	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62527373	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62527374	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62527375	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62527376	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62527400	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62527405	0.84[ASN][1000 genomes]
rs6415444	0.82[ASN][1000 genomes]
rs6469023	0.93[EUR][1000 genomes]
rs6469028	0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6469030	0.84[ASN][1000 genomes]
rs6469031	0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6469032	0.84[ASN][1000 genomes]
rs6469038	0.95[CHB][hapmap];0.91[CHD][hapmap];0.85[JPT][hapmap];0.87[ASN][1000 genomes]
rs6987512	0.94[EUR][1000 genomes]
rs6999580	0.84[ASN][1000 genomes]
rs7003520	0.84[ASN][1000 genomes]
rs7008840	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72676052	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs727419	0.95[CHB][hapmap];0.91[CHD][hapmap];0.85[JPT][hapmap];0.89[ASN][1000 genomes]
rs7459459	0.89[ASN][1000 genomes]
rs7460291	0.84[ASN][1000 genomes]
rs7464413	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7812766	0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7815337	0.83[ASN][1000 genomes]
rs7819043	0.93[EUR][1000 genomes]
rs7829054	0.86[ASN][1000 genomes]
rs7830426	0.84[ASN][1000 genomes]
rs7839195	0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7839239	0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7843166	0.86[EUR][1000 genomes]
rs7846149	0.84[ASN][1000 genomes]
rs7846262	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs993177	0.95[CHB][hapmap];0.85[JPT][hapmap];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021369	chr8:106493317-107243322	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv611840	chr8:106913294-107265915	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv611841	chr8:107048059-107090500	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs13277300	FZD7	trans	parietal	SCAN
rs13277300	FZD6	cis	parietal	SCAN

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107052200-107069200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:107058600-107067400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr8:107059200-107072000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr8:107060000-107064000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr8:107060000-107067200	Weak transcription	Hela-S3	cervix
6	chr8:107060000-107067400	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr8:107060200-107063400	Weak transcription	HUVEC	blood vessel
8	chr8:107060400-107067000	Weak transcription	NHLF	lung
9	chr8:107060400-107067400	Weak transcription	Fetal Kidney	kidney
10	chr8:107060600-107067000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr8:107060600-107067000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr8:107060600-107070800	Weak transcription	A549	lung
13	chr8:107060800-107064000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr8:107060800-107067200	Weak transcription	Osteobl	bone
15	chr8:107060800-107067400	Weak transcription	NH-A	brain

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