Variant report

Variant	rs1366969
Chromosome Location	chr8:107092851-107092852
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:107085770..107087985-chr8:107092764..107094318,2	MCF-7	breast:
2	chr8:107071595..107074143-chr8:107092425..107094759,2	K562	blood:
3	chr8:107092680..107095598-chr8:107097096..107099230,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000251003	Chromatin interaction

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs10092927	0.80[EUR][1000 genomes]
rs10955407	0.86[EUR][1000 genomes]
rs10955409	0.85[EUR][1000 genomes]
rs10955412	0.96[CHB][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes]
rs10955413	0.99[ASN][1000 genomes]
rs11781331	0.88[ASN][1000 genomes]
rs11782609	0.80[EUR][1000 genomes]
rs11786829	0.85[EUR][1000 genomes]
rs11997513	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12541635	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12674846	0.82[EUR][1000 genomes]
rs12677927	0.84[EUR][1000 genomes]
rs12680670	0.82[EUR][1000 genomes]
rs12681183	0.82[EUR][1000 genomes]
rs13274603	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs13277300	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1353450	0.86[EUR][1000 genomes]
rs1429676	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1496182	0.85[EUR][1000 genomes]
rs1603363	0.86[EUR][1000 genomes]
rs16873989	0.81[EUR][1000 genomes]
rs1835266	0.91[ASN][1000 genomes]
rs1835267	0.86[EUR][1000 genomes]
rs1896916	0.91[ASN][1000 genomes]
rs1896917	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1896918	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1896919	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2029881	0.82[EUR][1000 genomes]
rs2029882	0.85[EUR][1000 genomes]
rs2059943	0.89[EUR][1000 genomes]
rs2115703	0.86[EUR][1000 genomes]
rs2132471	0.81[EUR][1000 genomes]
rs2217391	0.89[EUR][1000 genomes]
rs2345070	0.89[EUR][1000 genomes]
rs2881036	0.98[ASN][1000 genomes]
rs2881037	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34177605	0.88[EUR][1000 genomes]
rs4099936	0.91[ASN][1000 genomes]
rs4416800	0.82[EUR][1000 genomes]
rs4734126	0.81[EUR][1000 genomes]
rs4734128	0.86[EUR][1000 genomes]
rs4734130	0.91[ASN][1000 genomes]
rs4734131	0.91[ASN][1000 genomes]
rs4734893	0.96[CEU][hapmap];0.81[EUR][1000 genomes]
rs4734894	0.82[EUR][1000 genomes]
rs4734895	0.82[EUR][1000 genomes]
rs4734896	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4734897	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55729609	0.86[EUR][1000 genomes]
rs55762012	0.86[EUR][1000 genomes]
rs55811614	0.80[EUR][1000 genomes]
rs56352125	0.86[EUR][1000 genomes]
rs56402027	0.86[EUR][1000 genomes]
rs57715289	0.81[EUR][1000 genomes]
rs59123253	0.82[EUR][1000 genomes]
rs62525696	0.80[EUR][1000 genomes]
rs62525736	0.82[EUR][1000 genomes]
rs62527363	0.85[EUR][1000 genomes]
rs62527373	0.82[EUR][1000 genomes]
rs62527374	0.83[EUR][1000 genomes]
rs62527376	0.86[EUR][1000 genomes]
rs62527400	0.86[EUR][1000 genomes]
rs6469023	0.82[EUR][1000 genomes]
rs6469028	0.84[EUR][1000 genomes]
rs6469031	0.86[EUR][1000 genomes]
rs6469038	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6987512	0.82[EUR][1000 genomes]
rs7008840	0.85[EUR][1000 genomes]
rs7016835	0.90[ASN][1000 genomes]
rs72676052	0.82[EUR][1000 genomes]
rs727419	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs7459459	0.98[ASN][1000 genomes]
rs7464413	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7812766	0.87[EUR][1000 genomes]
rs7819043	0.81[EUR][1000 genomes]
rs7839195	0.86[EUR][1000 genomes]
rs7839239	0.86[EUR][1000 genomes]
rs7846262	0.86[EUR][1000 genomes]
rs993177	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021369	chr8:106493317-107243322	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv611840	chr8:106913294-107265915	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv611842	chr8:107076421-107115482	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv891262	chr8:107076421-107209378	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv611843	chr8:107088426-107104545	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	esv2830191	chr8:107088426-107115482	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107090400-107095000	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr8:107090600-107099000	Weak transcription	Esophagus	oesophagus
3	chr8:107091800-107093400	Enhancers	Brain Hippocampus Middle	brain
4	chr8:107092400-107093000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr8:107092400-107093000	Enhancers	Ovary	ovary
6	chr8:107092400-107093600	Enhancers	Stomach Smooth Muscle	stomach
7	chr8:107092400-107094800	Enhancers	NH-A	brain
8	chr8:107092400-107095400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr8:107092400-107096200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr8:107092400-107096200	Enhancers	Osteobl	bone
11	chr8:107092600-107093000	Enhancers	Brain Cingulate Gyrus	brain
12	chr8:107092600-107093000	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr8:107092600-107094200	Weak transcription	Brain Anterior Caudate	brain
14	chr8:107092800-107093000	Flanking Active TSS	HUVEC	blood vessel
15	chr8:107092800-107093200	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr8:107092800-107093400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr8:107092800-107093400	Weak transcription	Aorta	Aorta
18	chr8:107092800-107094200	Weak transcription	NHLF	lung
19	chr8:107092800-107094400	Enhancers	Muscle Satellite Cultured Cells	--
20	chr8:107092800-107096400	Enhancers	Adipose Nuclei	Adipose

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