Variant report
| Variant | rs7459459 |
|---|---|
| Chromosome Location | chr8:107078026-107078027 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr8:107071316..107072942-chr8:107075565..107078465,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000251003 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs10955412 | 0.99[ASN][1000 genomes] |
| rs10955413 | 0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs11781331 | 0.90[ASN][1000 genomes] |
| rs11997513 | 0.98[ASN][1000 genomes] |
| rs12541635 | 0.98[ASN][1000 genomes] |
| rs12542361 | 0.82[EUR][1000 genomes] |
| rs13274603 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13277300 | 0.89[ASN][1000 genomes] |
| rs1366969 | 0.98[ASN][1000 genomes] |
| rs1835266 | 0.90[ASN][1000 genomes] |
| rs1896916 | 0.90[ASN][1000 genomes] |
| rs1896917 | 0.84[ASN][1000 genomes] |
| rs1896918 | 0.98[ASN][1000 genomes] |
| rs1896919 | 0.98[ASN][1000 genomes] |
| rs2881036 | 0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2881037 | 0.98[ASN][1000 genomes] |
| rs4099936 | 0.90[ASN][1000 genomes] |
| rs4734130 | 0.90[ASN][1000 genomes] |
| rs4734131 | 0.90[ASN][1000 genomes] |
| rs4734896 | 1.00[ASN][1000 genomes] |
| rs4734897 | 1.00[ASN][1000 genomes] |
| rs6469038 | 0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs7016835 | 0.90[ASN][1000 genomes] |
| rs727419 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7464413 | 1.00[ASN][1000 genomes] |
| rs7829054 | 0.88[EUR][1000 genomes] |
| rs7836196 | 0.80[EUR][1000 genomes] |
| rs993177 | 0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1021369 | chr8:106493317-107243322 | Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 13 gene(s) | inside rSNPs | diseases |
| 2 | nsv611840 | chr8:106913294-107265915 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 3 | nsv611841 | chr8:107048059-107090500 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv611842 | chr8:107076421-107115482 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 5 | nsv891262 | chr8:107076421-107209378 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
