Variant report

Variant	rs2881037
Chromosome Location	chr8:107090901-107090902
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 86 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs10092927	0.80[EUR][1000 genomes]
rs10955407	0.85[EUR][1000 genomes]
rs10955409	0.85[EUR][1000 genomes]
rs10955412	0.96[CHB][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes]
rs10955413	1.00[ASN][1000 genomes]
rs11781331	0.88[ASN][1000 genomes]
rs11782609	0.81[EUR][1000 genomes]
rs11786829	0.85[EUR][1000 genomes]
rs11997513	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12541635	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12674846	0.81[EUR][1000 genomes]
rs12677927	0.83[EUR][1000 genomes]
rs12680670	0.81[EUR][1000 genomes]
rs12681183	0.81[EUR][1000 genomes]
rs13274603	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs13277300	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1353450	0.85[EUR][1000 genomes]
rs1366969	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1429676	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1496182	0.85[EUR][1000 genomes]
rs1603363	0.85[EUR][1000 genomes]
rs16873989	0.81[EUR][1000 genomes]
rs1835266	0.91[ASN][1000 genomes]
rs1835267	0.85[EUR][1000 genomes]
rs1896916	0.91[ASN][1000 genomes]
rs1896917	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1896918	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1896919	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2029881	0.81[EUR][1000 genomes]
rs2029882	0.85[EUR][1000 genomes]
rs2059943	0.88[EUR][1000 genomes]
rs2115703	0.86[EUR][1000 genomes]
rs2132471	0.81[EUR][1000 genomes]
rs2217391	0.88[EUR][1000 genomes]
rs2345070	0.88[EUR][1000 genomes]
rs2881036	0.98[ASN][1000 genomes]
rs34177605	0.87[EUR][1000 genomes]
rs4099936	0.91[ASN][1000 genomes]
rs4416800	0.81[EUR][1000 genomes]
rs4734126	0.81[EUR][1000 genomes]
rs4734128	0.85[EUR][1000 genomes]
rs4734130	0.91[ASN][1000 genomes]
rs4734131	0.91[ASN][1000 genomes]
rs4734893	0.81[EUR][1000 genomes]
rs4734894	0.81[EUR][1000 genomes]
rs4734895	0.81[EUR][1000 genomes]
rs4734896	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4734897	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55729609	0.85[EUR][1000 genomes]
rs55762012	0.85[EUR][1000 genomes]
rs55811614	0.81[EUR][1000 genomes]
rs56352125	0.85[EUR][1000 genomes]
rs56402027	0.86[EUR][1000 genomes]
rs57715289	0.81[EUR][1000 genomes]
rs59123253	0.81[EUR][1000 genomes]
rs62525696	0.81[EUR][1000 genomes]
rs62525736	0.81[EUR][1000 genomes]
rs62527363	0.85[EUR][1000 genomes]
rs62527373	0.81[EUR][1000 genomes]
rs62527374	0.82[EUR][1000 genomes]
rs62527376	0.85[EUR][1000 genomes]
rs62527400	0.86[EUR][1000 genomes]
rs6469023	0.82[EUR][1000 genomes]
rs6469028	0.83[EUR][1000 genomes]
rs6469031	0.86[EUR][1000 genomes]
rs6469038	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs6987512	0.81[EUR][1000 genomes]
rs7008840	0.84[EUR][1000 genomes]
rs7016835	0.90[ASN][1000 genomes]
rs72676052	0.83[EUR][1000 genomes]
rs727419	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs7459459	0.98[ASN][1000 genomes]
rs7464413	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7812766	0.86[EUR][1000 genomes]
rs7819043	0.81[EUR][1000 genomes]
rs7839195	0.85[EUR][1000 genomes]
rs7839239	0.85[EUR][1000 genomes]
rs7846262	0.86[EUR][1000 genomes]
rs993177	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021369	chr8:106493317-107243322	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv611840	chr8:106913294-107265915	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv611842	chr8:107076421-107115482	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv891262	chr8:107076421-107209378	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv437078	chr8:107086419-107092211	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv611843	chr8:107088426-107104545	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	esv2830191	chr8:107088426-107115482	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107089800-107091600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr8:107090400-107095000	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr8:107090600-107099000	Weak transcription	Esophagus	oesophagus

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