Variant report

Variant	rs2029881
Chromosome Location	chr8:107002226-107002227
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 120 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:118)

rs_ID	r²[population]
rs10086055	0.92[ASN][1000 genomes]
rs10092927	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1032545	0.97[ASN][1000 genomes]
rs10505091	0.96[ASN][1000 genomes]
rs10808408	0.97[ASN][1000 genomes]
rs10955407	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10955408	0.92[ASN][1000 genomes]
rs10955409	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11781234	0.97[ASN][1000 genomes]
rs11782609	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11786829	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11997513	0.81[EUR][1000 genomes]
rs12541635	0.81[EUR][1000 genomes]
rs12542361	1.00[ASN][1000 genomes]
rs12542647	0.95[CHB][hapmap]
rs12546875	0.97[ASN][1000 genomes]
rs12674846	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12675478	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12676365	0.91[CHB][hapmap]
rs12677927	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12680670	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12681183	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13277300	0.94[EUR][1000 genomes]
rs13439705	0.95[ASN][1000 genomes]
rs1353449	0.90[CHB][hapmap]
rs1353450	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1366969	0.82[EUR][1000 genomes]
rs1429676	0.92[EUR][1000 genomes]
rs1429681	0.92[ASN][1000 genomes]
rs1496180	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1496181	0.92[ASN][1000 genomes]
rs1496182	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1496183	0.92[ASN][1000 genomes]
rs1603357	0.99[ASN][1000 genomes]
rs1603363	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16873989	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1817939	0.92[ASN][1000 genomes]
rs1835267	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1835268	0.90[ASN][1000 genomes]
rs1896918	0.81[EUR][1000 genomes]
rs1896919	0.81[EUR][1000 genomes]
rs2029878	0.92[ASN][1000 genomes]
rs2029879	0.92[ASN][1000 genomes]
rs2029880	0.92[ASN][1000 genomes]
rs2029882	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2059943	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2115703	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2132471	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2163124	0.92[ASN][1000 genomes]
rs2172997	0.97[ASN][1000 genomes]
rs2217391	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2345068	0.97[ASN][1000 genomes]
rs2345070	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2881037	0.81[EUR][1000 genomes]
rs34177605	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34872724	0.92[ASN][1000 genomes]
rs4416800	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4734126	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4734128	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4734892	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs4734893	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4734894	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4734895	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4734896	0.82[EUR][1000 genomes]
rs4734897	0.82[EUR][1000 genomes]
rs55639043	0.92[ASN][1000 genomes]
rs55729609	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55762012	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55811614	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56352125	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56402027	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57607757	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57715289	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59123253	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59858392	0.96[ASN][1000 genomes]
rs60482457	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62525696	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62525736	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62527360	0.92[ASN][1000 genomes]
rs62527363	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62527373	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62527374	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62527375	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62527376	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62527400	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62527405	0.92[ASN][1000 genomes]
rs6415444	0.90[ASN][1000 genomes]
rs6469023	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6469026	0.97[ASN][1000 genomes]
rs6469027	0.95[ASN][1000 genomes]
rs6469028	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6469030	0.92[ASN][1000 genomes]
rs6469031	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6469032	0.92[ASN][1000 genomes]
rs6984393	0.87[ASN][1000 genomes]
rs6987512	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6997487	0.95[ASN][1000 genomes]
rs6999580	0.92[ASN][1000 genomes]
rs7003520	0.92[ASN][1000 genomes]
rs7008840	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7012379	0.82[ASN][1000 genomes]
rs7013082	0.90[CHB][hapmap]
rs72676052	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7460291	0.92[ASN][1000 genomes]
rs7464413	0.82[EUR][1000 genomes]
rs7812766	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7814776	0.85[CHB][hapmap]
rs7815337	0.89[ASN][1000 genomes]
rs7819043	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7819501	0.97[ASN][1000 genomes]
rs7829054	0.93[ASN][1000 genomes]
rs7830426	0.92[ASN][1000 genomes]
rs7836196	0.96[ASN][1000 genomes]
rs7839195	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7839239	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7843166	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7846149	0.92[ASN][1000 genomes]
rs7846262	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021369	chr8:106493317-107243322	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv611840	chr8:106913294-107265915	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:106998800-107003600	Weak transcription	NH-A	brain
2	chr8:107000400-107002800	Enhancers	Colon Smooth Muscle	Colon
3	chr8:107000600-107006600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr8:107000800-107005400	Weak transcription	Aorta	Aorta
5	chr8:107000800-107009000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr8:107001000-107002400	Enhancers	Fetal Kidney	kidney
7	chr8:107001400-107002800	Enhancers	H1 Cell Line	embryonic stem cell
8	chr8:107001400-107002800	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr8:107001400-107003000	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr8:107001600-107002400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr8:107001600-107002400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr8:107001600-107002400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
13	chr8:107001600-107002400	Enhancers	Rectal Smooth Muscle	rectum
14	chr8:107001600-107002600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr8:107001600-107002600	Enhancers	H9 Cell Line	embryonic stem cell
16	chr8:107001600-107002600	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr8:107001600-107002600	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr8:107001600-107002800	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr8:107001600-107003200	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr8:107001800-107002800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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