Variant report

Variant	rs10955412
Chromosome Location	chr8:107075592-107075593
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:107071316..107072942-chr8:107075565..107078465,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000251003	Chromatin interaction

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10086055	0.88[EUR][1000 genomes]
rs1032545	0.82[EUR][1000 genomes]
rs10808408	0.82[EUR][1000 genomes]
rs10955408	0.87[EUR][1000 genomes]
rs10955413	0.97[ASN][1000 genomes]
rs11781234	0.82[EUR][1000 genomes]
rs11781331	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11997513	0.97[ASN][1000 genomes]
rs12541635	0.97[ASN][1000 genomes]
rs12546875	0.82[EUR][1000 genomes]
rs13274603	0.96[CHB][hapmap];0.95[JPT][hapmap];0.99[ASN][1000 genomes]
rs13277300	0.88[ASN][1000 genomes]
rs1366969	0.96[CHB][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes]
rs1429681	0.88[EUR][1000 genomes]
rs1496180	0.93[CEU][hapmap]
rs1496181	0.87[EUR][1000 genomes]
rs1496183	0.88[EUR][1000 genomes]
rs1603357	0.82[EUR][1000 genomes]
rs1817939	0.87[EUR][1000 genomes]
rs1835266	0.90[ASN][1000 genomes]
rs1896916	0.90[ASN][1000 genomes]
rs1896917	0.83[ASN][1000 genomes]
rs1896918	0.97[ASN][1000 genomes]
rs1896919	0.97[ASN][1000 genomes]
rs2029878	0.88[EUR][1000 genomes]
rs2029879	0.88[EUR][1000 genomes]
rs2029880	0.87[EUR][1000 genomes]
rs2163124	0.88[EUR][1000 genomes]
rs2345068	0.82[EUR][1000 genomes]
rs2881036	0.99[ASN][1000 genomes]
rs2881037	0.97[ASN][1000 genomes]
rs34872724	0.87[EUR][1000 genomes]
rs4099936	0.90[ASN][1000 genomes]
rs4734130	0.90[ASN][1000 genomes]
rs4734131	0.90[ASN][1000 genomes]
rs4734892	0.93[CEU][hapmap];0.83[EUR][1000 genomes]
rs4734896	0.99[ASN][1000 genomes]
rs4734897	0.99[ASN][1000 genomes]
rs55639043	0.87[EUR][1000 genomes]
rs62527360	0.86[EUR][1000 genomes]
rs62527405	0.87[EUR][1000 genomes]
rs6415444	0.85[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs6469026	0.84[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs6469027	0.84[EUR][1000 genomes]
rs6469030	0.87[EUR][1000 genomes]
rs6469032	0.87[EUR][1000 genomes]
rs6469038	0.95[CHB][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes]
rs6984393	0.83[EUR][1000 genomes]
rs6999580	0.86[EUR][1000 genomes]
rs7003520	0.90[EUR][1000 genomes]
rs7016835	0.89[ASN][1000 genomes]
rs727419	0.95[CHB][hapmap];0.95[JPT][hapmap];0.99[ASN][1000 genomes]
rs7459459	0.99[ASN][1000 genomes]
rs7460291	0.87[EUR][1000 genomes]
rs7464413	0.99[ASN][1000 genomes]
rs7819501	0.82[EUR][1000 genomes]
rs7830426	0.87[EUR][1000 genomes]
rs7846149	0.88[EUR][1000 genomes]
rs993177	0.96[CHB][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021369	chr8:106493317-107243322	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv611840	chr8:106913294-107265915	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv611841	chr8:107048059-107090500	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107073600-107078000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:107074600-107075800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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