Variant report

Variant	rs1835266
Chromosome Location	chr8:107099240-107099241
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10955412	0.82[CHB][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs10955413	0.91[ASN][1000 genomes]
rs11781331	0.81[ASN][1000 genomes]
rs11992937	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11997513	0.91[ASN][1000 genomes]
rs12155860	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12541635	0.91[ASN][1000 genomes]
rs13274603	0.86[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs1366969	0.86[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs1896916	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1896918	0.91[ASN][1000 genomes]
rs1896919	0.91[ASN][1000 genomes]
rs2881036	0.90[ASN][1000 genomes]
rs2881037	0.91[ASN][1000 genomes]
rs4099936	1.00[ASN][1000 genomes]
rs4734130	1.00[ASN][1000 genomes]
rs4734131	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4734896	0.90[ASN][1000 genomes]
rs4734897	0.90[ASN][1000 genomes]
rs6469038	0.86[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs6989082	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7000924	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7016835	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs727419	0.86[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs7459459	0.90[ASN][1000 genomes]
rs7464413	0.90[ASN][1000 genomes]
rs993177	0.86[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021369	chr8:106493317-107243322	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv611840	chr8:106913294-107265915	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv611842	chr8:107076421-107115482	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv891262	chr8:107076421-107209378	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv611843	chr8:107088426-107104545	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	esv2830191	chr8:107088426-107115482	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1835266	ZFPM2	cis	parietal	SCAN

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107097200-107099400	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr8:107097200-107100000	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr8:107097600-107100000	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr8:107097800-107099400	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr8:107097800-107100600	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr8:107098000-107100200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr8:107098600-107099400	Enhancers	Stomach Mucosa	stomach
8	chr8:107098600-107100000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr8:107098600-107100200	Enhancers	HMEC	breast
10	chr8:107098800-107099600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr8:107098800-107100000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
12	chr8:107098800-107100000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr8:107098800-107100200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr8:107098800-107100200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr8:107098800-107100200	Enhancers	NHEK	skin
16	chr8:107098800-107100400	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr8:107099000-107099400	Enhancers	Esophagus	oesophagus
18	chr8:107099000-107099400	Enhancers	Gastric	stomach
19	chr8:107099000-107099400	Enhancers	Right Atrium	heart
20	chr8:107099000-107099600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr8:107099000-107100000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr8:107099000-107100000	Enhancers	HepG2	liver
23	chr8:107099000-107100200	Enhancers	H1 Cell Line	embryonic stem cell
24	chr8:107099000-107100200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr8:107099000-107100200	Enhancers	Fetal Kidney	kidney
26	chr8:107099200-107099400	Enhancers	Fetal Lung	lung
27	chr8:107099200-107099600	Enhancers	HUES48 Cell Line	embryonic stem cell
28	chr8:107099200-107099600	Enhancers	Stomach Smooth Muscle	stomach
29	chr8:107099200-107100200	Enhancers	iPS-20b Cell Line	embryonic stem cell

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