Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10955412	0.90[JPT][hapmap]
rs12155858	0.98[ASN][1000 genomes]
rs12155859	0.98[ASN][1000 genomes]
rs12155860	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12155862	0.98[ASN][1000 genomes]
rs12155864	0.98[ASN][1000 genomes]
rs13274603	0.91[JPT][hapmap]
rs1366969	0.91[JPT][hapmap]
rs1429675	0.98[ASN][1000 genomes]
rs1835266	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1896916	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2099150	0.94[ASN][1000 genomes]
rs28709304	0.98[ASN][1000 genomes]
rs4734131	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6469038	0.95[JPT][hapmap]
rs6989082	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7000924	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7016835	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs727419	0.95[JPT][hapmap]
rs736627	0.98[ASN][1000 genomes]
rs9642802	0.98[ASN][1000 genomes]
rs993177	0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021369	chr8:106493317-107243322	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv611840	chr8:106913294-107265915	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv611842	chr8:107076421-107115482	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv891262	chr8:107076421-107209378	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	esv2830191	chr8:107088426-107115482	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107105000-107108800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:107107000-107108000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr8:107107200-107108000	Enhancers	Brain Hippocampus Middle	brain
4	chr8:107107200-107108800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr8:107107200-107108800	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr8:107107200-107109000	Enhancers	Brain Anterior Caudate	brain
7	chr8:107107400-107108800	Weak transcription	Brain Angular Gyrus	brain
8	chr8:107107600-107108200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr8:107107600-107108800	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr8:107107800-107108000	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr8:107107800-107108000	Enhancers	Brain Inferior Temporal Lobe	brain
12	chr8:107107800-107108000	Enhancers	Brain Substantia Nigra	brain
13	chr8:107107800-107108200	Enhancers	Right Atrium	heart
14	chr8:107107800-107108800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr8:107107800-107109000	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr8:107107800-107109400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr8:107107800-107109600	Enhancers	Aorta	Aorta

Quick Search: