Variant report

Variant	rs7816857
Chromosome Location	chr8:103805324-103805325
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:103769034..103771608-chr8:103804532..103806280,2	MCF-7	breast:
2	chr8:103613738..103615729-chr8:103803530..103805618,2	MCF-7	breast:
3	chr8:103664425..103672321-chr8:103786823..103809844,55	MCF-7	breast:
4	chr8:103640822..103642604-chr8:103804689..103806588,2	MCF-7	breast:
5	chr8:103803555..103806624-chr8:103818327..103821354,4	K562	blood:
6	chr8:103761444..103763819-chr8:103803611..103805535,2	MCF-7	breast:
7	chr8:103797903..103806624-chr8:103818327..103823736,14	K562	blood:
8	chr8:103656072..103671156-chr8:103783158..103810200,133	MCF-7	breast:
9	chr8:103731630..103733859-chr8:103803496..103805362,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000253669	Chromatin interaction
ENSG00000155090	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs16869796	0.83[AMR][1000 genomes]
rs16869818	1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs57996235	1.00[EUR][1000 genomes]
rs60254080	1.00[EUR][1000 genomes]
rs62523321	1.00[EUR][1000 genomes]
rs6468853	1.00[EUR][1000 genomes]
rs7003697	1.00[EUR][1000 genomes]
rs73282583	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33118	chr8:103358567-104068172	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	esv1814245	chr8:103735804-103824566	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
3	nsv1021898	chr8:103767324-103922482	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
4	nsv519814	chr8:103778809-103806914	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
5	nsv525735	chr8:103805097-103806914	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:103798800-103808600	Enhancers	Fetal Muscle Leg	muscle
2	chr8:103799400-103811200	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr8:103799600-103811000	Enhancers	Primary hematopoietic stem cells	blood
4	chr8:103800200-103807400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr8:103801600-103806200	Weak transcription	Brain Germinal Matrix	brain
6	chr8:103801600-103806800	Enhancers	Skeletal Muscle Female	skeletal muscle
7	chr8:103801800-103806400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr8:103802000-103806600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr8:103802000-103806800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr8:103802000-103809200	Weak transcription	Liver	Liver
11	chr8:103802200-103806400	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr8:103802200-103806400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr8:103802200-103806400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr8:103802200-103806600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr8:103802200-103806800	Weak transcription	Primary T helper cells fromperipheralblood	blood
16	chr8:103802200-103807000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr8:103802200-103807400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr8:103802400-103807000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr8:103802800-103806800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr8:103803000-103808000	Enhancers	Spleen	Spleen
21	chr8:103803200-103806600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr8:103803600-103806600	Weak transcription	GM12878-XiMat	blood
23	chr8:103803600-103807200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr8:103803600-103807200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr8:103803600-103807400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr8:103803800-103806200	Weak transcription	Primary B cells from cord blood	blood
27	chr8:103803800-103806200	Weak transcription	Esophagus	oesophagus
28	chr8:103803800-103806200	Weak transcription	Left Ventricle	heart
29	chr8:103803800-103806200	Weak transcription	Lung	lung
30	chr8:103803800-103806400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr8:103803800-103806400	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr8:103803800-103806400	Weak transcription	Pancreas	Pancrea
33	chr8:103803800-103806400	Enhancers	Monocytes-CD14+_RO01746	blood
34	chr8:103803800-103806600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr8:103803800-103806600	Enhancers	Primary hematopoietic stem cells short term culture	blood
36	chr8:103803800-103806600	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr8:103803800-103806600	Weak transcription	Duodenum Mucosa	Duodenum
38	chr8:103803800-103806800	Weak transcription	Primary B cells from peripheral blood	blood
39	chr8:103803800-103807000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr8:103803800-103807000	Weak transcription	Thymus	Thymus
41	chr8:103803800-103807000	Weak transcription	Osteobl	bone
42	chr8:103803800-103807200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr8:103803800-103807400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
44	chr8:103803800-103807400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr8:103803800-103807400	Weak transcription	Brain Cingulate Gyrus	brain
46	chr8:103803800-103807400	Weak transcription	K562	blood
47	chr8:103803800-103807600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
48	chr8:103803800-103809800	Weak transcription	Rectal Mucosa Donor 29	rectum
49	chr8:103803800-103809800	Weak transcription	Stomach Mucosa	stomach
50	chr8:103803800-103816400	Weak transcription	Small Intestine	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links