Variant report
| Variant | rs7818113 |
|---|---|
| Chromosome Location | chr8:54238948-54238949 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr8:54236248..54239021-chr8:54240226..54242196,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:36)
| rs_ID | r2[population] |
|---|---|
| rs10110650 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10504151 | 0.82[CEU][hapmap] |
| rs12056411 | 0.82[CEU][hapmap] |
| rs12056414 | 0.82[CEU][hapmap] |
| rs16918875 | 1.00[CEU][hapmap] |
| rs16918900 | 1.00[CEU][hapmap] |
| rs16918928 | 0.82[CEU][hapmap] |
| rs16918931 | 0.82[CEU][hapmap] |
| rs16918934 | 0.82[CEU][hapmap] |
| rs16918938 | 0.82[CEU][hapmap] |
| rs16918955 | 1.00[CEU][hapmap] |
| rs2303432 | 0.82[CEU][hapmap] |
| rs2303433 | 0.82[CEU][hapmap] |
| rs57118903 | 0.97[EUR][1000 genomes] |
| rs6473814 | 0.84[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6982096 | 0.82[CEU][hapmap] |
| rs6986052 | 0.82[CEU][hapmap] |
| rs6988508 | 1.00[CEU][hapmap] |
| rs7000559 | 0.97[EUR][1000 genomes] |
| rs7016275 | 1.00[CEU][hapmap] |
| rs73586457 | 0.84[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs73586471 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73586486 | 0.84[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73586489 | 0.84[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73588541 | 0.84[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73588573 | 1.00[EUR][1000 genomes] |
| rs7462780 | 0.84[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7813478 | 0.82[CEU][hapmap] |
| rs7816233 | 1.00[CEU][hapmap] |
| rs7822011 | 1.00[CEU][hapmap] |
| rs7829470 | 1.00[CEU][hapmap] |
| rs7832039 | 1.00[CEU][hapmap] |
| rs7839445 | 1.00[CEU][hapmap] |
| rs7840304 | 0.82[CEU][hapmap] |
| rs7843965 | 0.82[CEU][hapmap] |
| rs7844117 | 0.82[CEU][hapmap] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1016224 | chr8:53719941-54367534 | Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| 2 | nsv530534 | chr8:53787984-54367353 | Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| 3 | esv3377304 | chr8:53873441-54380875 | Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 4 | esv2752674 | chr8:54181147-54483747 | Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:54238200-54239000 | Enhancers | Brain Germinal Matrix | brain |
