Variant report

Variant	rs7819388
Chromosome Location	chr8:85161032-85161033
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1388413	0.83[LWK][hapmap]
rs1550217	0.96[AFR][1000 genomes]
rs16912697	1.00[TSI][hapmap]
rs57440045	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73688440	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73688465	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73688466	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7812555	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2753846	chr8:84637092-85239703	Active TSS Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv831374	chr8:85103604-85308976	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:85156200-85166000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr8:85156200-85169400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr8:85160600-85161200	Active TSS	Pancreatic Islets	Pancreatic Islet
4	chr8:85160800-85161200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr8:85161000-85161600	Weak transcription	Fetal Brain Male	brain
6	chr8:85161000-85165000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr8:85161000-85165800	Weak transcription	HUES6 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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