Variant report

Variant	rs16912697
Chromosome Location	chr8:85239561-85239562
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 101 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:94)

rs_ID	r²[population]
rs1388414	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs16912587	1.00[ASW][hapmap]
rs16912686	1.00[YRI][hapmap]
rs16912690	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs16912696	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs1955255	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs34319613	0.92[AFR][1000 genomes]
rs5009137	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs5009138	0.92[AFR][1000 genomes]
rs5009139	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs5009140	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs5009141	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs56952796	0.92[AFR][1000 genomes]
rs56999878	0.92[AFR][1000 genomes]
rs57379489	0.92[AFR][1000 genomes]
rs57538308	0.87[AFR][1000 genomes]
rs59415044	1.00[AMR][1000 genomes]
rs60414985	0.87[AFR][1000 genomes]
rs60990495	0.92[AFR][1000 genomes]
rs61661019	0.92[AFR][1000 genomes]
rs6473541	1.00[YRI][hapmap]
rs6473543	0.82[YRI][hapmap]
rs6473544	1.00[YRI][hapmap]
rs7002945	1.00[YRI][hapmap]
rs7003114	1.00[YRI][hapmap]
rs73291372	0.92[AFR][1000 genomes]
rs73291385	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73291389	1.00[AMR][1000 genomes]
rs73291391	0.92[AFR][1000 genomes]
rs73291393	0.83[AFR][1000 genomes]
rs73291396	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73291399	1.00[AMR][1000 genomes]
rs73291401	0.92[AFR][1000 genomes]
rs73291402	0.92[AFR][1000 genomes]
rs73293009	0.92[AFR][1000 genomes]
rs73293011	0.92[AFR][1000 genomes]
rs73293013	0.92[AFR][1000 genomes]
rs73293017	0.92[AFR][1000 genomes]
rs73293026	1.00[AMR][1000 genomes]
rs73293085	1.00[AMR][1000 genomes]
rs73293089	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73293091	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73293094	0.92[AFR][1000 genomes]
rs73293096	1.00[AMR][1000 genomes]
rs73293097	1.00[AMR][1000 genomes]
rs73293099	0.92[AFR][1000 genomes]
rs73293100	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73293101	1.00[AMR][1000 genomes]
rs73293102	0.92[AFR][1000 genomes]
rs73294892	0.92[AFR][1000 genomes]
rs73294894	1.00[AMR][1000 genomes]
rs73294897	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73294938	1.00[AMR][1000 genomes]
rs73294940	1.00[AMR][1000 genomes]
rs73296724	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73296860	1.00[AMR][1000 genomes]
rs73296865	1.00[AMR][1000 genomes]
rs73299826	1.00[AMR][1000 genomes]
rs73299828	1.00[AMR][1000 genomes]
rs73299831	1.00[AMR][1000 genomes]
rs73304840	1.00[AMR][1000 genomes]
rs73304860	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73304862	0.87[AFR][1000 genomes]
rs73304863	0.92[AFR][1000 genomes]
rs73304866	0.92[AFR][1000 genomes]
rs73304867	0.92[AFR][1000 genomes]
rs73304870	1.00[AMR][1000 genomes]
rs73304874	0.87[AFR][1000 genomes]
rs73304878	0.92[AFR][1000 genomes]
rs73304879	0.92[AFR][1000 genomes]
rs73304881	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73304882	1.00[AMR][1000 genomes]
rs73304884	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73304885	0.92[AFR][1000 genomes]
rs73306919	1.00[AMR][1000 genomes]
rs73306921	0.92[AFR][1000 genomes]
rs73306925	0.87[AFR][1000 genomes]
rs73306926	0.92[AFR][1000 genomes]
rs73306938	1.00[AMR][1000 genomes]
rs73306940	1.00[AMR][1000 genomes]
rs73306942	1.00[AMR][1000 genomes]
rs73306943	0.92[AFR][1000 genomes]
rs73306944	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73306950	0.92[AFR][1000 genomes]
rs73306951	0.92[AFR][1000 genomes]
rs73306952	1.00[AMR][1000 genomes]
rs73306954	0.83[AFR][1000 genomes]
rs73306956	1.00[AMR][1000 genomes]
rs73306958	0.92[AFR][1000 genomes]
rs73306959	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73306964	1.00[AMR][1000 genomes]
rs73306968	0.87[AFR][1000 genomes]
rs7815538	0.82[YRI][hapmap]
rs7819388	1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2753846	chr8:84637092-85239703	Active TSS Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv831374	chr8:85103604-85308976	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv1842719	chr8:85198548-85268951	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
4	nsv1028784	chr8:85215670-85268654	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
5	nsv1034144	chr8:85230634-85268654	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
6	nsv1028025	chr8:85239131-85268654	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
7	esv3324610	chr8:85239361-85239563	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:85238200-85240400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr8:85239000-85241400	Enhancers	Fetal Intestine Large	intestine
3	chr8:85239400-85240200	Weak transcription	Fetal Intestine Small	intestine

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