Variant report

Variant	rs5009137
Chromosome Location	chr8:85237500-85237501
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs1388414	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16912686	1.00[YRI][hapmap]
rs16912690	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16912696	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16912697	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs16912707	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1955255	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs34319613	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35603714	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs5009138	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs5009139	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs5009140	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs5009141	1.00[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56952796	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56999878	0.95[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs57379489	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57538308	0.90[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs57948903	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs60414985	0.90[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs60990495	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61661019	0.95[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs6473541	1.00[YRI][hapmap]
rs6473543	1.00[CEU][hapmap];0.87[YRI][hapmap]
rs6473544	1.00[YRI][hapmap]
rs7002945	1.00[YRI][hapmap]
rs7003114	1.00[YRI][hapmap]
rs73291372	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73291385	0.92[AFR][1000 genomes]
rs73291391	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73291393	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73291396	0.92[AFR][1000 genomes]
rs73291401	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73291402	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73293009	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73293011	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73293013	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73293017	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73293089	0.92[AFR][1000 genomes]
rs73293091	0.92[AFR][1000 genomes]
rs73293094	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73293099	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73293100	0.92[AFR][1000 genomes]
rs73293102	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73294892	0.95[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs73294897	0.92[AFR][1000 genomes]
rs73296724	0.92[AFR][1000 genomes]
rs73296859	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73296866	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73304859	0.80[AFR][1000 genomes]
rs73304860	0.92[AFR][1000 genomes]
rs73304862	0.90[AFR][1000 genomes]
rs73304863	0.95[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs73304866	0.95[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs73304867	0.95[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs73304874	0.90[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs73304878	0.95[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs73304879	0.95[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs73304881	0.92[AFR][1000 genomes]
rs73304884	0.92[AFR][1000 genomes]
rs73304885	0.95[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs73306921	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs73306925	0.95[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs73306926	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs73306939	0.86[AFR][1000 genomes]
rs73306943	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs73306944	0.92[AFR][1000 genomes]
rs73306950	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs73306951	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs73306954	0.90[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs73306958	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs73306959	0.92[AFR][1000 genomes]
rs73306968	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7815538	0.83[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2753846	chr8:84637092-85239703	Active TSS Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv831374	chr8:85103604-85308976	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv1842719	chr8:85198548-85268951	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
4	nsv1028784	chr8:85215670-85268654	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
5	nsv1034144	chr8:85230634-85268654	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:85235000-85238200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr8:85237200-85239000	Weak transcription	Fetal Intestine Large	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links