Variant report

Variant	rs16912707
Chromosome Location	chr8:85273429-85273430
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10504793	1.00[CEU][hapmap];1.00[GIH][hapmap]
rs12541642	0.82[CEU][hapmap]
rs12542479	1.00[CEU][hapmap]
rs12680668	1.00[ASW][hapmap]
rs1388414	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs16912690	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs16912696	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17711687	1.00[GIH][hapmap]
rs17712267	1.00[GIH][hapmap]
rs17785011	1.00[GIH][hapmap]
rs1955255	0.85[EUR][1000 genomes]
rs34319613	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35603714	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs5009137	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs5009138	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs5009139	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs5009140	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs5009141	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56952796	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56999878	0.85[EUR][1000 genomes]
rs57379489	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs57538308	0.85[EUR][1000 genomes]
rs57948903	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs60414985	0.85[EUR][1000 genomes]
rs60990495	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61661019	0.85[EUR][1000 genomes]
rs6982764	1.00[ASW][hapmap]
rs73291372	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73291391	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73291393	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73291401	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73291402	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73293009	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73293011	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73293013	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73293017	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73293094	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73293099	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73293102	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73294892	0.85[EUR][1000 genomes]
rs73296859	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73296866	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73304863	0.85[EUR][1000 genomes]
rs73304866	0.85[EUR][1000 genomes]
rs73304867	0.85[EUR][1000 genomes]
rs73304874	0.85[EUR][1000 genomes]
rs73304878	0.85[EUR][1000 genomes]
rs73304879	0.85[EUR][1000 genomes]
rs73304885	0.85[EUR][1000 genomes]
rs73306921	0.85[EUR][1000 genomes]
rs73306925	0.85[EUR][1000 genomes]
rs73306926	0.85[EUR][1000 genomes]
rs73306943	0.85[EUR][1000 genomes]
rs73306950	0.85[EUR][1000 genomes]
rs73306951	0.85[EUR][1000 genomes]
rs73306954	0.85[EUR][1000 genomes]
rs73306958	0.85[EUR][1000 genomes]
rs73306968	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831374	chr8:85103604-85308976	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv1806721	chr8:85257984-85274061	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
3	nsv831375	chr8:85272352-85463621	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:85272200-85273600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr8:85273200-85273600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr8:85273400-85274200	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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