Variant report

Variant	rs61661019
Chromosome Location	chr8:85207486-85207487
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs1388414	0.95[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs16912690	0.95[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs16912696	0.95[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs16912697	0.92[AFR][1000 genomes]
rs16912707	0.85[EUR][1000 genomes]
rs1955255	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34319613	0.95[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs35603714	0.85[EUR][1000 genomes]
rs5009137	0.95[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs5009138	0.95[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs5009139	0.95[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs5009140	0.95[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs5009141	0.85[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs56952796	0.95[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs56999878	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57379489	0.95[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs57538308	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57948903	0.90[EUR][1000 genomes]
rs60414985	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60990495	0.95[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs73291372	0.95[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs73291385	0.92[AFR][1000 genomes]
rs73291391	0.95[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs73291393	0.85[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs73291396	0.92[AFR][1000 genomes]
rs73291401	0.95[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs73291402	0.95[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs73293009	0.95[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs73293011	0.95[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs73293013	0.95[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs73293017	0.95[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs73293089	0.92[AFR][1000 genomes]
rs73293091	0.92[AFR][1000 genomes]
rs73293094	0.95[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs73293099	0.95[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs73293100	0.92[AFR][1000 genomes]
rs73293102	0.95[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs73294892	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73294897	0.92[AFR][1000 genomes]
rs73296724	0.92[AFR][1000 genomes]
rs73296859	0.85[EUR][1000 genomes]
rs73296866	0.81[EUR][1000 genomes]
rs73304860	0.92[AFR][1000 genomes]
rs73304862	0.95[AFR][1000 genomes]
rs73304863	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73304866	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73304867	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73304874	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73304878	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73304879	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73304881	0.92[AFR][1000 genomes]
rs73304884	0.92[AFR][1000 genomes]
rs73304885	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73306921	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73306925	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73306926	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73306939	0.81[AFR][1000 genomes]
rs73306943	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73306944	0.92[AFR][1000 genomes]
rs73306950	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73306951	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73306954	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73306958	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73306959	0.92[AFR][1000 genomes]
rs73306968	0.90[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs7815538	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2753846	chr8:84637092-85239703	Active TSS Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv831374	chr8:85103604-85308976	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv1842719	chr8:85198548-85268951	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:85203800-85210200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr8:85205600-85208400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr8:85205800-85208400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr8:85206600-85207800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr8:85207200-85207600	Enhancers	Stomach Mucosa	stomach
6	chr8:85207200-85208400	Weak transcription	HUES6 Cell Line	embryonic stem cell

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