Variant report

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1388414	0.83[YRI][hapmap]
rs16912686	0.83[YRI][hapmap]
rs16912690	0.83[YRI][hapmap]
rs16912696	0.83[YRI][hapmap]
rs16912697	0.82[YRI][hapmap]
rs5009137	0.83[YRI][hapmap]
rs5009139	0.83[YRI][hapmap]
rs5009140	0.83[YRI][hapmap]
rs5009141	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs56999878	0.80[AFR][1000 genomes]
rs57538308	0.85[AFR][1000 genomes]
rs61661019	0.80[AFR][1000 genomes]
rs6473541	0.83[YRI][hapmap]
rs6473543	1.00[YRI][hapmap]
rs6473544	0.83[YRI][hapmap]
rs6982764	0.88[CEU][hapmap];0.82[YRI][hapmap]
rs6983050	0.88[CEU][hapmap];0.83[YRI][hapmap]
rs7002945	0.83[YRI][hapmap]
rs7003114	0.83[YRI][hapmap]
rs73294892	0.80[AFR][1000 genomes]
rs73304862	0.85[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs73304863	0.80[AFR][1000 genomes]
rs73304866	0.80[AFR][1000 genomes]
rs73304867	0.80[AFR][1000 genomes]
rs73304874	0.85[AFR][1000 genomes]
rs73304878	0.80[AFR][1000 genomes]
rs73304879	0.80[AFR][1000 genomes]
rs73304885	0.80[AFR][1000 genomes]
rs73306939	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73306954	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2753846	chr8:84637092-85239703	Active TSS Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv831374	chr8:85103604-85308976	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv1842719	chr8:85198548-85268951	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:85203800-85210200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr8:85205600-85208400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr8:85205800-85208400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr8:85207200-85208400	Weak transcription	HUES6 Cell Line	embryonic stem cell

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