Variant report

Variant	rs7002945
Chromosome Location	chr8:85223602-85223603
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs1388414	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs16912686	1.00[YRI][hapmap]
rs16912690	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs16912696	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs16912697	1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs1955255	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs34319613	0.89[AFR][1000 genomes]
rs5009137	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs5009138	0.89[AFR][1000 genomes]
rs5009139	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs5009140	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs5009141	1.00[YRI][hapmap];0.80[AFR][1000 genomes]
rs56952796	0.89[AFR][1000 genomes]
rs56999878	0.89[AFR][1000 genomes]
rs57379489	0.89[AFR][1000 genomes]
rs57538308	0.85[AFR][1000 genomes]
rs60414985	0.85[AFR][1000 genomes]
rs60990495	0.89[AFR][1000 genomes]
rs61661019	0.89[AFR][1000 genomes]
rs6473541	1.00[YRI][hapmap]
rs6473543	0.87[YRI][hapmap]
rs6473544	1.00[YRI][hapmap]
rs7003114	1.00[YRI][hapmap]
rs73291372	0.89[AFR][1000 genomes]
rs73291385	0.97[AFR][1000 genomes]
rs73291391	0.89[AFR][1000 genomes]
rs73291393	0.80[AFR][1000 genomes]
rs73291396	0.97[AFR][1000 genomes]
rs73291401	0.89[AFR][1000 genomes]
rs73291402	0.89[AFR][1000 genomes]
rs73293009	0.89[AFR][1000 genomes]
rs73293011	0.89[AFR][1000 genomes]
rs73293013	0.89[AFR][1000 genomes]
rs73293017	0.89[AFR][1000 genomes]
rs73293089	0.97[AFR][1000 genomes]
rs73293091	0.97[AFR][1000 genomes]
rs73293094	0.89[AFR][1000 genomes]
rs73293099	0.89[AFR][1000 genomes]
rs73293100	0.97[AFR][1000 genomes]
rs73293102	0.89[AFR][1000 genomes]
rs73294892	0.89[AFR][1000 genomes]
rs73294897	0.97[AFR][1000 genomes]
rs73296724	0.97[AFR][1000 genomes]
rs73304860	0.97[AFR][1000 genomes]
rs73304862	0.85[AFR][1000 genomes]
rs73304863	0.89[AFR][1000 genomes]
rs73304866	0.89[AFR][1000 genomes]
rs73304867	0.89[AFR][1000 genomes]
rs73304874	0.85[AFR][1000 genomes]
rs73304878	0.89[AFR][1000 genomes]
rs73304879	0.89[AFR][1000 genomes]
rs73304881	0.97[AFR][1000 genomes]
rs73304884	0.97[AFR][1000 genomes]
rs73304885	0.89[AFR][1000 genomes]
rs73306921	0.89[AFR][1000 genomes]
rs73306925	0.85[AFR][1000 genomes]
rs73306926	0.89[AFR][1000 genomes]
rs73306943	0.89[AFR][1000 genomes]
rs73306944	0.97[AFR][1000 genomes]
rs73306950	0.89[AFR][1000 genomes]
rs73306951	0.89[AFR][1000 genomes]
rs73306954	0.80[AFR][1000 genomes]
rs73306958	0.89[AFR][1000 genomes]
rs73306959	0.97[AFR][1000 genomes]
rs73306968	0.85[AFR][1000 genomes]
rs7815538	0.83[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2753846	chr8:84637092-85239703	Active TSS Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv831374	chr8:85103604-85308976	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv1842719	chr8:85198548-85268951	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
4	nsv1028784	chr8:85215670-85268654	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links