Variant report

Variant	rs7820371
Chromosome Location	chr8:59209433-59209434
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs16923236	1.00[AMR][1000 genomes]
rs16923298	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16923358	1.00[AMR][1000 genomes]
rs4604417	1.00[AMR][1000 genomes]
rs58710819	1.00[AMR][1000 genomes]
rs6997053	1.00[AMR][1000 genomes]
rs7830554	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7832113	1.00[AMR][1000 genomes]
rs7839207	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761427	chr8:59204373-59242564	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59208600-59209600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr8:59209200-59210000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr8:59209200-59211000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr8:59209400-59210000	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr8:59209400-59210400	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr8:59209400-59210800	Enhancers	iPS-15b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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