Variant report

Variant	rs7823050
Chromosome Location	chr8:95751502-95751503
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 84 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs10091213	0.81[ASN][1000 genomes]
rs10110080	0.88[ASN][1000 genomes]
rs1046155	0.81[ASN][1000 genomes]
rs1046163	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs10956925	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs11785	0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs12386792	0.98[ASN][1000 genomes]
rs12543234	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12543514	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12545296	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12546282	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12675372	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12677519	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs12678311	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13248437	0.88[ASN][1000 genomes]
rs13260827	0.87[ASN][1000 genomes]
rs13267007	0.93[ASN][1000 genomes]
rs1365203	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1365205	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs1549466	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs15710	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs15726	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs17717161	0.87[CHB][hapmap];0.82[JPT][hapmap]
rs2033074	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs2068005	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs2241505	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs2288260	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2303453	0.87[JPT][hapmap]
rs2554396	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2554397	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2722874	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2722876	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2722883	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2722884	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs28659779	0.88[ASN][1000 genomes]
rs34733016	0.81[ASN][1000 genomes]
rs3864655	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4008177	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4348461	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs4639480	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6471457	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs6471460	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6471464	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs6471465	0.81[ASN][1000 genomes]
rs6471466	0.81[ASN][1000 genomes]
rs6471467	0.81[ASN][1000 genomes]
rs6471468	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs6471471	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs6471472	0.80[ASN][1000 genomes]
rs6471475	0.80[ASN][1000 genomes]
rs6471478	0.93[ASN][1000 genomes]
rs67900173	0.81[ASN][1000 genomes]
rs6988635	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs6992360	0.88[ASN][1000 genomes]
rs7009161	0.86[ASN][1000 genomes]
rs7010722	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs7016360	0.81[ASN][1000 genomes]
rs7017996	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7387164	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7388010	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs7461991	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs7462846	0.81[ASN][1000 genomes]
rs7812489	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7813107	0.90[ASN][1000 genomes]
rs7813216	0.95[CHB][hapmap];0.95[JPT][hapmap];0.98[ASN][1000 genomes]
rs7813657	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7814238	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7814803	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs7816188	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs7816645	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs7824332	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7827727	0.88[ASN][1000 genomes]
rs7829467	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs7832771	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs7833363	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs7840284	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs7842246	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs7842400	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7842716	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9643347	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs9692638	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017301	chr8:95273503-96248352	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv539680	chr8:95273503-96248352	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv532338	chr8:95296118-95971825	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:95732800-95761400	Weak transcription	Spleen	Spleen
2	chr8:95732800-95780400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr8:95733000-95761600	Weak transcription	Aorta	Aorta
4	chr8:95733000-95784400	Weak transcription	Esophagus	oesophagus
5	chr8:95733000-95803800	Weak transcription	Psoas Muscle	Psoas
6	chr8:95733000-95805200	Weak transcription	Colonic Mucosa	Colon
7	chr8:95733200-95752000	Weak transcription	Primary B cells from cord blood	blood
8	chr8:95733200-95774600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr8:95733200-95805000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr8:95733400-95752000	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr8:95733400-95783800	Weak transcription	Gastric	stomach
12	chr8:95733400-95784800	Weak transcription	Small Intestine	intestine
13	chr8:95733600-95751800	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr8:95733600-95753400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr8:95733600-95760200	Weak transcription	Thymus	Thymus
16	chr8:95733600-95779400	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr8:95733600-95782600	Weak transcription	Brain Substantia Nigra	brain
18	chr8:95733600-95809400	Weak transcription	Rectal Smooth Muscle	rectum
19	chr8:95733800-95751800	Weak transcription	NHEK	skin
20	chr8:95733800-95770400	Weak transcription	Brain Hippocampus Middle	brain
21	chr8:95733800-95783600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chr8:95733800-95806400	Weak transcription	Fetal Brain Male	brain
23	chr8:95734000-95751800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr8:95734000-95751800	Weak transcription	A549	lung
25	chr8:95734000-95761400	Weak transcription	HUVEC	blood vessel
26	chr8:95734000-95761600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr8:95734000-95783600	Weak transcription	Fetal Kidney	kidney
28	chr8:95734200-95752000	Weak transcription	NH-A	brain
29	chr8:95734200-95784600	Weak transcription	Brain Angular Gyrus	brain
30	chr8:95735400-95787800	Weak transcription	Hela-S3	cervix
31	chr8:95737800-95777800	Weak transcription	Muscle Satellite Cultured Cells	--
32	chr8:95740400-95751600	Weak transcription	Primary T cells from cord blood	blood
33	chr8:95740400-95755800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr8:95740600-95760800	Weak transcription	Right Ventricle	heart
35	chr8:95740600-95761200	Weak transcription	Pancreas	Pancrea
36	chr8:95740600-95769400	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr8:95740800-95751600	Weak transcription	Stomach Smooth Muscle	stomach
38	chr8:95740800-95752000	Weak transcription	Primary hematopoietic stem cells	blood
39	chr8:95740800-95760800	Weak transcription	Ovary	ovary
40	chr8:95740800-95782200	Weak transcription	Primary B cells from peripheral blood	blood
41	chr8:95740800-95782800	Weak transcription	Brain Cingulate Gyrus	brain
42	chr8:95740800-95799000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
43	chr8:95741000-95751800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr8:95741000-95768600	Weak transcription	Rectal Mucosa Donor 29	rectum
45	chr8:95741000-95778000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
46	chr8:95741200-95751600	Weak transcription	Primary T cells fromperipheralblood	blood
47	chr8:95741200-95751600	Weak transcription	Monocytes-CD14+_RO01746	blood
48	chr8:95741200-95751800	Weak transcription	Brain Anterior Caudate	brain
49	chr8:95741200-95752200	Weak transcription	Skeletal Muscle Female	skeletal muscle
50	chr8:95741200-95754800	Weak transcription	Fetal Brain Female	brain

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