Variant report

Variant	rs13267007
Chromosome Location	chr8:95732283-95732284
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:20)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:20 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:94752319..94754025-chr8:95731183..95733270,2	K562	blood:
2	chr8:95564818..95567463-chr8:95729750..95733556,7	MCF-7	breast:
3	chr8:95731670..95733358-chr8:95907566..95910332,2	MCF-7	breast:
4	chr8:95485646..95487396-chr8:95731182..95733187,2	MCF-7	breast:
5	chr8:95731611..95732606-chr9:91933311..91934024,2	Hela-S3	cervix:
6	chr8:95728931..95733735-chr8:95735785..95738955,5	K562	blood:
7	chr8:95731040..95733498-chr8:95907170..95908983,2	MCF-7	breast:
8	chr8:95564422..95566417-chr8:95731300..95733624,2	K562	blood:
9	chr8:95564312..95566828-chr8:95731001..95732970,2	MCF-7	breast:
10	chr8:95730604..95734079-chr8:95734980..95738829,4	K562	blood:
11	chr8:95448469..95450952-chr8:95730677..95732921,2	K562	blood:
12	chr15:72766094..72767084-chr8:95731493..95732399,2	Hela-S3	cervix:
13	chr8:95728931..95732611-chr8:95833805..95837140,4	MCF-7	breast:
14	chr8:95564422..95566417-chr8:95730460..95733624,3	K562	blood:
15	chr8:95650894..95656484-chr8:95728446..95733482,20	MCF-7	breast:
16	chr8:95650400..95656999-chr8:95729644..95735467,19	MCF-7	breast:
17	chr8:95485981..95488677-chr8:95730553..95733529,2	K562	blood:
18	chr8:95731513..95733267-chr8:95825138..95827545,2	MCF-7	breast:
19	chr8:95730539..95733622-chr8:95834206..95838888,6	K562	blood:
20	chr8:95732129..95734691-chr8:95765341..95767828,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000253704	Chromatin interaction
ENSG00000156162	Chromatin interaction
ENSG00000164941	Chromatin interaction
ENSG00000212998	Chromatin interaction
ENSG00000183808	Chromatin interaction
ENSG00000187742	Chromatin interaction
ENSG00000175305	Chromatin interaction
ENSG00000166233	Chromatin interaction
ENSG00000104413	Chromatin interaction
ENSG00000197275	Chromatin interaction
ENSG00000164944	Chromatin interaction
ENSG00000261437	Chromatin interaction
ENSG00000265817	Chromatin interaction
ENSG00000253848	Chromatin interaction
ENSG00000156170	Chromatin interaction
ENSG00000261423	Chromatin interaction

Extended variants
information (count: 120 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:115)

rs_ID	r²[population]
rs10091213	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10110080	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1046155	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1046163	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10956925	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11785	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12386792	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12543234	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12543253	0.80[EUR][1000 genomes]
rs12543258	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12543514	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12544778	0.81[EUR][1000 genomes]
rs12545296	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12545776	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12546263	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12546282	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12548165	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12675372	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12676890	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12676908	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12677807	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12677830	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12678311	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12678709	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12678729	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13248437	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13254184	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13260827	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13266255	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1365203	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1365205	0.80[EUR][1000 genomes]
rs1549466	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs15710	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs15726	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17717161	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2052719	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2052720	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2052721	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2241504	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2288260	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2303453	0.82[AMR][1000 genomes]
rs2554396	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2554397	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2722874	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2722876	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2722883	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2722884	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28659779	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34733016	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3864655	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4008177	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4639480	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55890917	0.82[ASN][1000 genomes]
rs57653937	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs58422141	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs59515090	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs59557867	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs60573557	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62523459	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6471460	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6471461	0.83[ASN][1000 genomes]
rs6471462	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6471464	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6471465	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6471466	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6471467	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6471468	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6471470	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6471471	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6471472	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6471473	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6471474	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6471475	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6471478	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66477120	0.81[EUR][1000 genomes]
rs66850135	0.81[EUR][1000 genomes]
rs67900173	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6992360	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7009161	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7010722	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7016360	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7017752	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7017996	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72676924	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs72676929	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72676935	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7387164	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7388010	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7461991	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7462846	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7464856	0.81[ASN][1000 genomes]
rs7812489	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7813107	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7813216	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7813657	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7814238	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7815719	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7816188	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7816645	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7820441	0.82[AMR][1000 genomes]
rs7823050	0.93[ASN][1000 genomes]
rs7824332	0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7827727	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7829467	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7832022	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7832771	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7833299	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7833363	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7836949	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7840284	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7842246	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7842400	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7842716	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9643347	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9692638	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017301	chr8:95273503-96248352	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv539680	chr8:95273503-96248352	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv532338	chr8:95296118-95971825	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	nsv511392	chr8:95721252-95732766	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
5	nsv611751	chr8:95721435-95742394	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:95730600-95733800	Active TSS	HUES64 Cell Line	embryonic stem cell
2	chr8:95730800-95733000	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr8:95730800-95733600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr8:95730800-95733800	Active TSS	HUES6 Cell Line	embryonic stem cell
5	chr8:95731000-95732800	Active TSS	Breast Myoepithelial Primary Cells	Breast
6	chr8:95731000-95732800	Active TSS	Rectal Smooth Muscle	rectum
7	chr8:95731000-95733000	Active TSS	Fetal Kidney	kidney
8	chr8:95731000-95733000	Active TSS	NHEK	skin
9	chr8:95731000-95733000	Active TSS	Osteobl	bone
10	chr8:95731000-95733200	Active TSS	H1 Cell Line	embryonic stem cell
11	chr8:95731000-95733200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr8:95731000-95733400	Active TSS	H9 Cell Line	embryonic stem cell
13	chr8:95731000-95733400	Active TSS	iPS-18 Cell Line	embryonic stem cell
14	chr8:95731000-95733400	Active TSS	GM12878-XiMat	blood
15	chr8:95731000-95733400	Active TSS	HSMM	muscle
16	chr8:95731000-95733600	Active TSS	Rectal Mucosa Donor 29	rectum
17	chr8:95731000-95733800	Active TSS	HUES48 Cell Line	embryonic stem cell
18	chr8:95731000-95733800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr8:95731000-95734000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr8:95731000-95734000	Active TSS	iPS-20b Cell Line	embryonic stem cell
21	chr8:95731000-95734000	Active TSS	NHDF-Ad	bronchial
22	chr8:95731000-95734200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr8:95731200-95732400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr8:95731200-95732400	Active TSS	Primary T cells fromperipheralblood	blood
25	chr8:95731200-95732400	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
26	chr8:95731200-95732600	Active TSS	Brain Inferior Temporal Lobe	brain
27	chr8:95731200-95732600	Active TSS	Fetal Brain Female	brain
28	chr8:95731200-95732600	Active TSS	Fetal Thymus	thymus
29	chr8:95731200-95732800	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr8:95731200-95732800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr8:95731200-95732800	Active TSS	Brain Anterior Caudate	brain
32	chr8:95731200-95733000	Active TSS	Aorta	Aorta
33	chr8:95731200-95733000	Active TSS	Brain Substantia Nigra	brain
34	chr8:95731200-95733000	Active TSS	Colonic Mucosa	Colon
35	chr8:95731200-95733000	Active TSS	Fetal Lung	lung
36	chr8:95731200-95733000	Active TSS	Psoas Muscle	Psoas
37	chr8:95731200-95733200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
38	chr8:95731200-95733200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
39	chr8:95731200-95733200	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr8:95731200-95733200	Active TSS	Brain Angular Gyrus	brain
41	chr8:95731200-95733200	Active TSS	Pancreatic Islets	Pancreatic Islet
42	chr8:95731200-95733200	Active TSS	Fetal Muscle Trunk	muscle
43	chr8:95731200-95733200	Active TSS	Ovary	ovary
44	chr8:95731200-95733200	Active TSS	Stomach Mucosa	stomach
45	chr8:95731200-95733200	Active TSS	HSMMtube	muscle
46	chr8:95731200-95733200	Active TSS	NHLF	lung
47	chr8:95731200-95733400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr8:95731200-95733400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr8:95731200-95733400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
50	chr8:95731200-95733600	Active TSS	Placenta	Placenta

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