Variant report

Variant	rs7833299
Chromosome Location	chr8:95722596-95722597
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr8:95722481-95722972	HCT-116	colon:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:95623526..95627073-chr8:95722461..95725966,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000253429	TF binding region

Extended variants
information (count: 118 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:113)

rs_ID	r²[population]
rs10091213	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10110080	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1046155	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1046163	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10956925	0.90[EUR][1000 genomes]
rs11785	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12542239	0.80[ASN][1000 genomes]
rs12543234	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12543253	0.90[EUR][1000 genomes]
rs12543258	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12543514	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12544778	0.91[EUR][1000 genomes]
rs12545296	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12545776	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12546263	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12546282	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12548165	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12675372	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12676890	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12676908	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12677519	0.80[ASN][1000 genomes]
rs12677807	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12677830	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12678311	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12678709	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12678729	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13248437	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13254184	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13260827	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13266255	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13267007	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1365203	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1365205	0.90[EUR][1000 genomes]
rs1549466	0.90[EUR][1000 genomes]
rs15710	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs15726	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17717161	0.90[EUR][1000 genomes]
rs2052718	0.85[ASN][1000 genomes]
rs2052719	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2052720	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2052721	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2241504	0.90[EUR][1000 genomes]
rs2288260	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2303453	0.85[EUR][1000 genomes]
rs2554396	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2554397	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2722874	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2722876	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2722883	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2722884	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28659779	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34733016	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3864655	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4008177	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4639480	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55890917	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57653937	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58422141	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59515090	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59557867	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs60573557	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62523459	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6471457	0.80[ASN][1000 genomes]
rs6471460	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6471461	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6471462	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6471464	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6471465	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6471466	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6471467	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6471468	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6471470	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6471471	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6471472	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6471473	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6471474	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6471475	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6471478	0.82[ASN][1000 genomes]
rs66477120	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs66850135	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs67900173	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6992360	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7009161	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7010722	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7016360	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7017752	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7017996	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72676924	0.90[EUR][1000 genomes]
rs72676929	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72676935	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7387164	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7388010	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7462846	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7464856	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7812489	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7813107	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7813657	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7814238	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7814803	0.80[ASN][1000 genomes]
rs7815719	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7820240	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7820441	0.85[EUR][1000 genomes]
rs7827727	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7829467	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7832022	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7832771	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7833363	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7836949	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7842246	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7842400	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7842716	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9643347	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9692638	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017301	chr8:95273503-96248352	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv539680	chr8:95273503-96248352	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv532338	chr8:95296118-95971825	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	nsv511392	chr8:95721252-95732766	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
5	nsv611751	chr8:95721435-95742394	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:95690600-95722600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr8:95712600-95728800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr8:95713000-95730600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr8:95714400-95731400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr8:95716200-95730800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr8:95717200-95730800	Weak transcription	Fetal Intestine Small	intestine
7	chr8:95718400-95731400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr8:95718600-95726200	Weak transcription	NHEK	skin
9	chr8:95718800-95723600	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr8:95718800-95731200	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr8:95719200-95722800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr8:95719200-95730800	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr8:95719400-95724200	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr8:95719400-95730400	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr8:95719400-95730800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr8:95719400-95731000	Weak transcription	Placenta	Placenta
17	chr8:95719600-95724000	Weak transcription	Colonic Mucosa	Colon
18	chr8:95719600-95726200	Weak transcription	HMEC	breast
19	chr8:95719600-95731000	Weak transcription	Duodenum Mucosa	Duodenum
20	chr8:95719800-95726400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr8:95719800-95727000	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr8:95719800-95727000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
23	chr8:95719800-95730400	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr8:95720000-95731000	Weak transcription	Fetal Intestine Large	intestine
25	chr8:95720200-95731000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr8:95720200-95731000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
27	chr8:95720400-95730800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr8:95720600-95726000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr8:95720800-95726200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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