Variant report

Variant	rs7825673
Chromosome Location	chr8:96211331-96211332
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:96210411..96213768-chr8:96214869..96218158,4	K562	blood:
2	chr8:96210411..96214534-chr8:96214869..96218158,4	K562	blood:
3	chr8:96205463..96207920-chr8:96210246..96213783,6	MCF-7	breast:
4	chr8:96210702..96213000-chr8:96259520..96261197,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000253773	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11987379	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11987491	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12545256	0.82[YRI][hapmap];0.83[AFR][1000 genomes]
rs13250256	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13253679	0.91[EUR][1000 genomes]
rs13257907	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13259025	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13260846	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13261245	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13270120	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs297571	1.00[CHB][hapmap]
rs4236832	0.87[CEU][hapmap];0.85[EUR][1000 genomes]
rs4734300	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67235598	0.87[EUR][1000 genomes]
rs7012668	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs734666	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7825383	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7830669	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017301	chr8:95273503-96248352	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv539680	chr8:95273503-96248352	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv523655	chr8:96205920-96239113	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	esv16466	chr8:96206151-96243934	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv516035	chr8:96208726-96235451	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:96204600-96212400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr8:96205000-96213400	Weak transcription	Lung	lung
3	chr8:96205600-96213800	Weak transcription	Thymus	Thymus
4	chr8:96206400-96215000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr8:96207400-96212800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr8:96208400-96212000	Weak transcription	Primary B cells from peripheral blood	blood
7	chr8:96208600-96211800	Weak transcription	Right Atrium	heart
8	chr8:96208600-96216400	Weak transcription	Gastric	stomach
9	chr8:96209000-96211800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr8:96209000-96220000	Weak transcription	Right Ventricle	heart
11	chr8:96209600-96211400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr8:96210200-96212600	Weak transcription	Pancreas	Pancrea
13	chr8:96210200-96214600	Enhancers	Hela-S3	cervix
14	chr8:96210400-96212600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr8:96210400-96212600	Weak transcription	Esophagus	oesophagus
16	chr8:96210800-96211600	Weak transcription	HepG2	liver
17	chr8:96210800-96212600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr8:96210800-96212600	Weak transcription	A549	lung
19	chr8:96210800-96214000	Weak transcription	Placenta	Placenta
20	chr8:96211000-96212400	Weak transcription	HMEC	breast
21	chr8:96211000-96212800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr8:96211200-96212000	Weak transcription	Stomach Mucosa	stomach
23	chr8:96211200-96212600	Weak transcription	NHEK	skin

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