Variant report

Variant	rs7830669
Chromosome Location	chr8:96205198-96205199
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:17)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:17 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:96073668..96076397-chr8:96204920..96206874,2	MCF-7	breast:
2	chr8:96205065..96207467-chr8:96211843..96213815,3	MCF-7	breast:
3	chr8:96203588..96205355-chr8:96213750..96216635,2	MCF-7	breast:
4	chr8:96203164..96205455-chr8:96217318..96219508,3	MCF-7	breast:
5	chr8:96203357..96206821-chr8:96279416..96281679,3	MCF-7	breast:
6	chr8:96203613..96205936-chr8:96222642..96224693,2	MCF-7	breast:
7	chr8:96202933..96207621-chr8:96217016..96224905,7	MCF-7	breast:
8	chr8:96204685..96206421-chr8:96234538..96236078,2	MCF-7	breast:
9	chr8:96173200..96176100-chr8:96203502..96205695,2	MCF-7	breast:
10	chr8:96202506..96205446-chr8:96207707..96209234,2	K562	blood:
11	chr8:96112732..96115050-chr8:96203183..96205638,2	MCF-7	breast:
12	chr8:96200453..96203080-chr8:96203459..96205990,2	K562	blood:
13	chr8:96145592..96149916-chr8:96202019..96205363,5	MCF-7	breast:
14	chr8:96204194..96207440-chr8:96236906..96239736,3	MCF-7	breast:
15	chr8:96201649..96205216-chr8:96206550..96209721,4	MCF-7	breast:
16	chr8:96193279..96197671-chr8:96202932..96206464,6	MCF-7	breast:
17	chr8:96113223..96116394-chr8:96203733..96206616,4	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000175895	Chromatin interaction
ENSG00000156172	Chromatin interaction
ENSG00000253773	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs13257907	1.00[CHB][hapmap]
rs13261245	1.00[CHB][hapmap]
rs297571	1.00[CHB][hapmap]
rs7825673	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017301	chr8:95273503-96248352	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv539680	chr8:95273503-96248352	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:96201800-96205600	Enhancers	HMEC	breast
2	chr8:96201800-96205800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr8:96201800-96206800	Enhancers	Fetal Thymus	thymus
4	chr8:96202600-96205200	Enhancers	Esophagus	oesophagus
5	chr8:96202600-96205600	Enhancers	Thymus	Thymus
6	chr8:96202600-96205800	Enhancers	NHEK	skin
7	chr8:96202600-96206000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr8:96202600-96206200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr8:96203400-96205800	Enhancers	HSMMtube	muscle
10	chr8:96203600-96208200	Weak transcription	Right Ventricle	heart
11	chr8:96203800-96206400	Enhancers	Hela-S3	cervix
12	chr8:96204200-96206000	Enhancers	Placenta	Placenta
13	chr8:96204400-96205800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr8:96204400-96206400	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr8:96204400-96208200	Weak transcription	Gastric	stomach
16	chr8:96204600-96206600	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr8:96204600-96212400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr8:96204800-96205400	Enhancers	H9 Cell Line	embryonic stem cell
19	chr8:96204800-96205400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr8:96204800-96205600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr8:96204800-96205600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr8:96204800-96205800	Enhancers	H1 Cell Line	embryonic stem cell
23	chr8:96204800-96206000	Enhancers	HUES6 Cell Line	embryonic stem cell
24	chr8:96204800-96206000	Enhancers	iPS-18 Cell Line	embryonic stem cell
25	chr8:96204800-96206000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
26	chr8:96204800-96206600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr8:96205000-96205400	Enhancers	HUES64 Cell Line	embryonic stem cell
28	chr8:96205000-96205800	Enhancers	HUES48 Cell Line	embryonic stem cell
29	chr8:96205000-96206400	Enhancers	iPS-15b Cell Line	embryonic stem cell
30	chr8:96205000-96208000	Weak transcription	Primary B cells from peripheral blood	blood
31	chr8:96205000-96213400	Weak transcription	Lung	lung

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