Variant report

Variant	rs7825816
Chromosome Location	chr8:54830280-54830281
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11984932	0.94[ASN][1000 genomes]
rs11992921	1.00[ASN][1000 genomes]
rs16919683	1.00[EUR][1000 genomes]
rs55938755	0.94[ASN][1000 genomes]
rs56863500	1.00[ASN][1000 genomes]
rs58564664	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58780122	1.00[ASN][1000 genomes]
rs59633885	1.00[ASN][1000 genomes]
rs73589234	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73680368	1.00[ASN][1000 genomes]
rs73680370	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023983	chr8:54790309-55145770	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv539623	chr8:54790309-55145770	Bivalent Enhancer Genic enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:54818600-54843600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:54819600-54831000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr8:54819800-54830600	Weak transcription	NHLF	lung
4	chr8:54823000-54830600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr8:54825000-54833000	Weak transcription	A549	lung
6	chr8:54827000-54830400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr8:54828000-54843600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr8:54828400-54842800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr8:54829200-54843400	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr8:54829600-54830400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr8:54829600-54830800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr8:54830000-54830800	Enhancers	HMEC	breast
13	chr8:54830200-54830600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr8:54830200-54830600	Enhancers	NHDF-Ad	bronchial
15	chr8:54830200-54830800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr8:54830200-54831000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr8:54830200-54831000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr8:54830200-54831000	Enhancers	NHEK	skin
19	chr8:54830200-54831200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links