Variant report

Variant	rs7827075
Chromosome Location	chr8:58991844-58991845
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:58989456..58993031-chr8:59145472..59149096,3	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10110195	0.82[AMR][1000 genomes]
rs7001467	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73682141	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831324	chr8:58844151-59045309	Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:58979400-58999600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr8:58980400-58994400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr8:58980600-58999600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr8:58980800-58992000	Weak transcription	Fetal Intestine Small	intestine
5	chr8:58983400-59003800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr8:58983600-58993400	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr8:58983600-59001200	Weak transcription	Fetal Kidney	kidney
8	chr8:58984000-59003600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr8:58984400-58999200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr8:58984600-58994400	Weak transcription	Brain Angular Gyrus	brain
11	chr8:58984600-59003200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr8:58984600-59004200	Weak transcription	Brain Hippocampus Middle	brain
13	chr8:58987000-58993200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr8:58987400-58999200	Weak transcription	Right Atrium	heart
15	chr8:58987400-59003600	Weak transcription	Colon Smooth Muscle	Colon
16	chr8:58987400-59010800	Weak transcription	Psoas Muscle	Psoas
17	chr8:58988000-58994200	Strong transcription	Fetal Muscle Leg	muscle
18	chr8:58988400-58993800	Strong transcription	Cortex derived primary cultured neurospheres	brain
19	chr8:58988800-58993200	Enhancers	HepG2	liver
20	chr8:58989000-58993400	Weak transcription	Right Ventricle	heart
21	chr8:58989200-59014400	Weak transcription	Aorta	Aorta
22	chr8:58989400-58999400	Weak transcription	Lung	lung
23	chr8:58990000-59003800	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr8:58990200-58994400	Weak transcription	Placenta	Placenta
25	chr8:58990200-59001200	Weak transcription	Adipose Nuclei	Adipose
26	chr8:58990200-59001200	Weak transcription	Brain Germinal Matrix	brain
27	chr8:58990200-59003600	Weak transcription	Spleen	Spleen
28	chr8:58990400-58992000	Weak transcription	Brain Cingulate Gyrus	brain
29	chr8:58990400-58993200	Weak transcription	Fetal Muscle Trunk	muscle
30	chr8:58990400-58996200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr8:58990400-58999800	Weak transcription	HUES6 Cell Line	embryonic stem cell
32	chr8:58990400-58999800	Weak transcription	Fetal Lung	lung
33	chr8:58990400-59002200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
34	chr8:58990400-59003000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr8:58990400-59003400	Weak transcription	Fetal Brain Female	brain
36	chr8:58990400-59003600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr8:58990400-59003800	Weak transcription	Fetal Brain Male	brain
38	chr8:58990400-59004400	Weak transcription	Stomach Smooth Muscle	stomach
39	chr8:58991400-58992000	Enhancers	HSMM	muscle
40	chr8:58991400-58992000	Enhancers	HSMMtube	muscle
41	chr8:58991400-58992000	Enhancers	NHEK	skin
42	chr8:58991400-58992200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr8:58991400-58992200	Enhancers	Muscle Satellite Cultured Cells	--
44	chr8:58991400-58992200	Enhancers	Liver	Liver
45	chr8:58991400-58992200	Enhancers	Hela-S3	cervix
46	chr8:58991400-58992200	Enhancers	HMEC	breast
47	chr8:58991400-58993000	Enhancers	Fetal Intestine Large	intestine
48	chr8:58991400-58993400	Enhancers	Placenta Amnion	Placenta Amnion
49	chr8:58991400-58993600	Enhancers	Fetal Heart	heart
50	chr8:58991600-58992000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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