Variant report

Variant	rs10110195
Chromosome Location	chr8:58992405-58992406
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:58989456..58993031-chr8:59145472..59149096,3	MCF-7	breast:

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10096582	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes]
rs10106186	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs10109756	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs10113330	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs10957030	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs11774174	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11781102	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11781204	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11986581	1.00[TSI][hapmap];0.82[EUR][1000 genomes]
rs11998721	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12114432	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs16918702	1.00[CEU][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes]
rs16922937	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs16922943	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs16922946	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs16923020	1.00[MEX][hapmap]
rs16923081	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes]
rs16923089	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs16923114	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs28508605	1.00[ASN][1000 genomes]
rs56288562	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57239755	0.94[EUR][1000 genomes]
rs57550641	1.00[ASN][1000 genomes]
rs58595014	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59166085	1.00[ASN][1000 genomes]
rs59375037	0.94[EUR][1000 genomes]
rs60139253	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60839707	0.94[EUR][1000 genomes]
rs61406356	0.94[EUR][1000 genomes]
rs61521318	1.00[ASN][1000 genomes]
rs61610794	0.94[EUR][1000 genomes]
rs6471679	1.00[CHB][hapmap]
rs6989882	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7000941	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7001467	0.88[ASW][hapmap];0.82[MEX][hapmap];0.86[YRI][hapmap];0.82[AMR][1000 genomes]
rs7007800	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7015049	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs73236447	1.00[ASN][1000 genomes]
rs73236448	1.00[ASN][1000 genomes]
rs73236451	1.00[ASN][1000 genomes]
rs73236452	1.00[ASN][1000 genomes]
rs73236455	1.00[ASN][1000 genomes]
rs73236458	1.00[ASN][1000 genomes]
rs73236461	1.00[ASN][1000 genomes]
rs73236476	1.00[ASN][1000 genomes]
rs73236481	1.00[ASN][1000 genomes]
rs73236484	1.00[ASN][1000 genomes]
rs73236488	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73236490	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73241723	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73682130	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73682133	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73682134	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73682136	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73682137	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73682138	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73682140	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73682141	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73682142	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73682143	0.94[EUR][1000 genomes]
rs73682145	0.94[EUR][1000 genomes]
rs73682146	0.94[EUR][1000 genomes]
rs73682149	0.94[EUR][1000 genomes]
rs73682150	0.94[EUR][1000 genomes]
rs73682152	0.83[EUR][1000 genomes]
rs7812600	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7816440	1.00[CHB][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7821169	1.00[CHB][hapmap]
rs7827075	0.82[AMR][1000 genomes]
rs884135	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs884136	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9694113	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9694139	1.00[CHB][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831324	chr8:58844151-59045309	Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:58979400-58999600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr8:58980400-58994400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr8:58980600-58999600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr8:58983400-59003800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr8:58983600-58993400	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr8:58983600-59001200	Weak transcription	Fetal Kidney	kidney
7	chr8:58984000-59003600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr8:58984400-58999200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr8:58984600-58994400	Weak transcription	Brain Angular Gyrus	brain
10	chr8:58984600-59003200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr8:58984600-59004200	Weak transcription	Brain Hippocampus Middle	brain
12	chr8:58987000-58993200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr8:58987400-58999200	Weak transcription	Right Atrium	heart
14	chr8:58987400-59003600	Weak transcription	Colon Smooth Muscle	Colon
15	chr8:58987400-59010800	Weak transcription	Psoas Muscle	Psoas
16	chr8:58988000-58994200	Strong transcription	Fetal Muscle Leg	muscle
17	chr8:58988400-58993800	Strong transcription	Cortex derived primary cultured neurospheres	brain
18	chr8:58988800-58993200	Enhancers	HepG2	liver
19	chr8:58989000-58993400	Weak transcription	Right Ventricle	heart
20	chr8:58989200-59014400	Weak transcription	Aorta	Aorta
21	chr8:58989400-58999400	Weak transcription	Lung	lung
22	chr8:58990000-59003800	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr8:58990200-58994400	Weak transcription	Placenta	Placenta
24	chr8:58990200-59001200	Weak transcription	Adipose Nuclei	Adipose
25	chr8:58990200-59001200	Weak transcription	Brain Germinal Matrix	brain
26	chr8:58990200-59003600	Weak transcription	Spleen	Spleen
27	chr8:58990400-58993200	Weak transcription	Fetal Muscle Trunk	muscle
28	chr8:58990400-58996200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr8:58990400-58999800	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr8:58990400-58999800	Weak transcription	Fetal Lung	lung
31	chr8:58990400-59002200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr8:58990400-59003000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr8:58990400-59003400	Weak transcription	Fetal Brain Female	brain
34	chr8:58990400-59003600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr8:58990400-59003800	Weak transcription	Fetal Brain Male	brain
36	chr8:58990400-59004400	Weak transcription	Stomach Smooth Muscle	stomach
37	chr8:58991400-58993000	Enhancers	Fetal Intestine Large	intestine
38	chr8:58991400-58993400	Enhancers	Placenta Amnion	Placenta Amnion
39	chr8:58991400-58993600	Enhancers	Fetal Heart	heart
40	chr8:58991600-58992600	Strong transcription	Fetal Stomach	stomach
41	chr8:58991600-58992800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr8:58991800-58999400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr8:58991800-58999400	Weak transcription	Left Ventricle	heart
44	chr8:58991800-58999600	Weak transcription	NHDF-Ad	bronchial
45	chr8:58992000-58993000	Enhancers	Skeletal Muscle Male	skeletal muscle
46	chr8:58992000-58994600	Weak transcription	NHEK	skin
47	chr8:58992000-58995800	Weak transcription	HSMM	muscle
48	chr8:58992000-59004800	Weak transcription	HSMMtube	muscle
49	chr8:58992000-59007000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr8:58992200-58998200	Weak transcription	Liver	Liver

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