Variant report

Variant	rs73236476
Chromosome Location	chr8:58985567-58985568
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:58906976..58908719-chr8:58984081..58986529,3	MCF-7	breast:
2	chr8:58980424..58983334-chr8:58985225..58988967,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000169122	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10110195	1.00[ASN][1000 genomes]
rs10957030	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11774174	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11781102	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11781204	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11998721	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12114432	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16922937	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16922943	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16922946	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16923114	1.00[ASN][1000 genomes]
rs28508605	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56288562	1.00[ASN][1000 genomes]
rs57550641	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58595014	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59166085	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60139253	1.00[ASN][1000 genomes]
rs61521318	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6471679	0.90[EUR][1000 genomes]
rs6989882	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7000941	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7007800	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7015049	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73236447	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73236448	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73236451	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73236452	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73236455	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73236458	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73236461	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73236481	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73236484	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73236488	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73236490	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73241723	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73682130	1.00[ASN][1000 genomes]
rs73682133	1.00[ASN][1000 genomes]
rs73682134	1.00[ASN][1000 genomes]
rs73682136	1.00[ASN][1000 genomes]
rs73682137	1.00[ASN][1000 genomes]
rs73682138	1.00[ASN][1000 genomes]
rs73682140	1.00[ASN][1000 genomes]
rs73682141	1.00[ASN][1000 genomes]
rs73682142	1.00[ASN][1000 genomes]
rs7812600	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7816440	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs884135	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs884136	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9694113	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9694139	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831324	chr8:58844151-59045309	Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv1803360	chr8:58976889-58986166	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:58935600-58988800	Weak transcription	Aorta	Aorta
2	chr8:58952200-58986400	Weak transcription	Adipose Nuclei	Adipose
3	chr8:58979400-58999600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr8:58979600-58988600	Weak transcription	Lung	lung
5	chr8:58980200-58988800	Weak transcription	Placenta	Placenta
6	chr8:58980400-58991400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr8:58980400-58994400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr8:58980600-58988800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr8:58980600-58999600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr8:58980800-58989200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr8:58980800-58991600	Weak transcription	Osteobl	bone
12	chr8:58980800-58992000	Weak transcription	Fetal Intestine Small	intestine
13	chr8:58981200-58988800	Weak transcription	Ovary	ovary
14	chr8:58981200-58989600	Weak transcription	NHLF	lung
15	chr8:58981400-58985800	Weak transcription	Liver	Liver
16	chr8:58982200-58986600	Weak transcription	HepG2	liver
17	chr8:58983000-58986400	Enhancers	Fetal Lung	lung
18	chr8:58983000-58986800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr8:58983000-58989800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr8:58983200-58986800	Weak transcription	Spleen	Spleen
21	chr8:58983200-58988400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr8:58983200-58988600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr8:58983400-58988400	Weak transcription	Gastric	stomach
24	chr8:58983400-59003800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr8:58983600-58993400	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr8:58983600-59001200	Weak transcription	Fetal Kidney	kidney
27	chr8:58984000-59003600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr8:58984200-58991600	Weak transcription	NH-A	brain
29	chr8:58984400-58986400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr8:58984400-58986600	Weak transcription	Colon Smooth Muscle	Colon
31	chr8:58984400-58986600	Weak transcription	Fetal Stomach	stomach
32	chr8:58984400-58988000	Weak transcription	Fetal Muscle Trunk	muscle
33	chr8:58984400-58999200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
34	chr8:58984600-58987800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr8:58984600-58988400	Weak transcription	HSMMtube	muscle
36	chr8:58984600-58988600	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr8:58984600-58989000	Weak transcription	Brain Cingulate Gyrus	brain
38	chr8:58984600-58989400	Weak transcription	HUES6 Cell Line	embryonic stem cell
39	chr8:58984600-58989800	Weak transcription	Brain Anterior Caudate	brain
40	chr8:58984600-58991400	Weak transcription	NHDF-Ad	bronchial
41	chr8:58984600-58991800	Weak transcription	Stomach Mucosa	stomach
42	chr8:58984600-58994400	Weak transcription	Brain Angular Gyrus	brain
43	chr8:58984600-59003200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr8:58984600-59004200	Weak transcription	Brain Hippocampus Middle	brain
45	chr8:58984800-58985800	Weak transcription	Fetal Brain Male	brain
46	chr8:58984800-58985800	Weak transcription	Left Ventricle	heart
47	chr8:58984800-58986400	Weak transcription	Stomach Smooth Muscle	stomach
48	chr8:58984800-58986800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr8:58984800-58986800	Weak transcription	Psoas Muscle	Psoas
50	chr8:58984800-58986800	Weak transcription	Right Atrium	heart

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