Variant report

Variant	rs10957030
Chromosome Location	chr8:58959964-58959965
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:58918597..58920441-chr8:58959526..58962470,2	MCF-7	breast:
2	chr8:58959136..58960793-chr8:58960961..58963378,2	K562	blood:

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10089259	0.85[CEU][hapmap]
rs10096582	1.00[CHD][hapmap];1.00[MEX][hapmap]
rs10110195	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs1108188	0.85[CEU][hapmap]
rs11774174	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11780747	1.00[TSI][hapmap]
rs11781102	1.00[CEU][hapmap];1.00[CHB][hapmap];0.80[YRI][hapmap];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11781204	1.00[CEU][hapmap];1.00[CHB][hapmap];0.80[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11997733	0.85[CEU][hapmap]
rs11998721	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12114432	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.80[YRI][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16918702	1.00[MEX][hapmap]
rs16922937	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16922943	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16922946	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16923081	1.00[CHD][hapmap];1.00[MEX][hapmap]
rs16923114	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs28508605	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56288562	1.00[ASN][1000 genomes]
rs57550641	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58595014	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59166085	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60139253	1.00[ASN][1000 genomes]
rs61521318	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6471679	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[TSI][hapmap];0.90[EUR][1000 genomes]
rs6989882	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7000941	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7007800	1.00[CEU][hapmap];1.00[CHB][hapmap];0.80[YRI][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7015049	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap];0.89[YRI][hapmap];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73236447	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73236448	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73236451	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73236452	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73236455	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73236458	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73236461	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73236476	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73236481	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73236484	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73236488	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73236490	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73241723	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73682130	1.00[ASN][1000 genomes]
rs73682133	1.00[ASN][1000 genomes]
rs73682134	1.00[ASN][1000 genomes]
rs73682136	1.00[ASN][1000 genomes]
rs73682137	1.00[ASN][1000 genomes]
rs73682138	1.00[ASN][1000 genomes]
rs73682140	1.00[ASN][1000 genomes]
rs73682141	1.00[ASN][1000 genomes]
rs73682142	1.00[ASN][1000 genomes]
rs7812600	1.00[CEU][hapmap];1.00[CHB][hapmap];0.80[YRI][hapmap];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7813490	0.85[CEU][hapmap]
rs7816440	1.00[CHB][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7828423	0.85[CEU][hapmap];1.00[TSI][hapmap]
rs7832353	0.85[CEU][hapmap];0.81[TSI][hapmap]
rs884135	1.00[CEU][hapmap];1.00[CHB][hapmap];0.80[YRI][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs884136	1.00[CEU][hapmap];1.00[CHB][hapmap];0.80[YRI][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9694113	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9694139	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831324	chr8:58844151-59045309	Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:58935600-58988800	Weak transcription	Aorta	Aorta
2	chr8:58944600-58963000	Weak transcription	Stomach Mucosa	stomach
3	chr8:58944800-58962800	Weak transcription	Gastric	stomach
4	chr8:58946000-58960000	Weak transcription	Fetal Kidney	kidney
5	chr8:58949400-58966800	Weak transcription	Liver	Liver
6	chr8:58951800-58963000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr8:58951800-58963200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr8:58952000-58964200	Weak transcription	Osteobl	bone
9	chr8:58952200-58960400	Weak transcription	Colon Smooth Muscle	Colon
10	chr8:58952200-58960600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr8:58952200-58960800	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr8:58952200-58961000	Weak transcription	Brain Germinal Matrix	brain
13	chr8:58952200-58961200	Weak transcription	Brain Anterior Caudate	brain
14	chr8:58952200-58962800	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr8:58952200-58986400	Weak transcription	Adipose Nuclei	Adipose
16	chr8:58952400-58960200	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr8:58952400-58960800	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr8:58952800-58979600	Weak transcription	HSMMtube	muscle
19	chr8:58953000-58960600	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr8:58953000-58960600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr8:58953800-58960200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr8:58954200-58961200	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr8:58954200-58962800	Weak transcription	Lung	lung
24	chr8:58954400-58960400	Weak transcription	NHDF-Ad	bronchial
25	chr8:58954400-58960600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr8:58954400-58960800	Weak transcription	Spleen	Spleen
27	chr8:58954400-58962800	Weak transcription	Right Ventricle	heart
28	chr8:58954400-58973200	Weak transcription	Psoas Muscle	Psoas
29	chr8:58955000-58963000	Weak transcription	Stomach Smooth Muscle	stomach
30	chr8:58955200-58974400	Weak transcription	Fetal Brain Male	brain
31	chr8:58955600-58962600	Weak transcription	Fetal Brain Female	brain
32	chr8:58956000-58960800	Weak transcription	Right Atrium	heart
33	chr8:58956000-58963000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr8:58956000-58969400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr8:58957600-58960000	Strong transcription	Fetal Lung	lung
36	chr8:58957600-58960800	Weak transcription	Fetal Heart	heart
37	chr8:58958000-58964000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr8:58958000-58969400	Weak transcription	HSMM	muscle
39	chr8:58958000-58979000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr8:58958200-58968000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
41	chr8:58958600-58960000	Weak transcription	Fetal Stomach	stomach
42	chr8:58958600-58960800	Weak transcription	Left Ventricle	heart
43	chr8:58958800-58962800	Weak transcription	Fetal Muscle Trunk	muscle
44	chr8:58959600-58960800	Weak transcription	Fetal Muscle Leg	muscle
45	chr8:58959600-58964600	Enhancers	Cortex derived primary cultured neurospheres	brain
46	chr8:58959800-58960400	Enhancers	Ovary	ovary
47	chr8:58959800-58961000	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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