Variant report

Variant	rs7813490
Chromosome Location	chr8:58926145-58926146
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:58905823..58908650-chr8:58924248..58926314,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000169122	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10089259	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10957030	0.85[CEU][hapmap]
rs1106314	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1108188	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11774174	0.85[CEU][hapmap]
rs11780747	0.85[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11781102	0.85[CEU][hapmap]
rs11781204	0.82[CEU][hapmap]
rs11997733	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11998721	0.85[CEU][hapmap]
rs12114432	0.85[CEU][hapmap]
rs16922937	0.85[CEU][hapmap]
rs16922943	0.85[CEU][hapmap]
rs16922946	0.85[CEU][hapmap]
rs28550347	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61126058	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6471679	0.85[CEU][hapmap]
rs67784763	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs68143639	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6989512	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6989882	0.85[CEU][hapmap]
rs7000941	0.85[CEU][hapmap]
rs7006812	0.92[CHB][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7007800	0.85[CEU][hapmap]
rs7009526	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs7015049	0.85[CEU][hapmap]
rs7017824	0.86[CHB][hapmap]
rs72621433	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7812600	0.85[CEU][hapmap]
rs7826402	0.90[YRI][hapmap]
rs7828423	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7832353	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7841370	0.81[CHB][hapmap]
rs7842966	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7845456	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs884135	0.82[CEU][hapmap]
rs884136	0.85[CEU][hapmap]
rs9297984	0.81[CHB][hapmap]
rs9694113	0.85[CEU][hapmap]
rs9694139	0.85[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831324	chr8:58844151-59045309	Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:58908400-58926400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr8:58908400-58928800	Weak transcription	Esophagus	oesophagus
3	chr8:58908400-58929000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr8:58908600-58942800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr8:58908800-58929200	Weak transcription	Brain Substantia Nigra	brain
6	chr8:58909400-58928800	Weak transcription	Fetal Intestine Large	intestine
7	chr8:58909400-58943000	Weak transcription	Brain Cingulate Gyrus	brain
8	chr8:58913400-58929000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr8:58914200-58929000	Weak transcription	Rectal Smooth Muscle	rectum
10	chr8:58916200-58926400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr8:58916400-58926600	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr8:58916400-58929000	Weak transcription	NHDF-Ad	bronchial
13	chr8:58916400-58929200	Weak transcription	Brain Hippocampus Middle	brain
14	chr8:58916400-58934600	Weak transcription	Brain Anterior Caudate	brain
15	chr8:58916600-58926400	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr8:58916600-58926400	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr8:58916600-58929000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr8:58916600-58929200	Weak transcription	Osteobl	bone
19	chr8:58916800-58928800	Weak transcription	Psoas Muscle	Psoas
20	chr8:58916800-58929200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr8:58917000-58926400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr8:58917000-58927200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr8:58917600-58928000	Weak transcription	Fetal Intestine Small	intestine
24	chr8:58918400-58926400	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr8:58918400-58927000	Strong transcription	Fetal Stomach	stomach
26	chr8:58918800-58926400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr8:58919400-58926200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr8:58920000-58929000	Weak transcription	Pancreas	Pancrea
29	chr8:58920200-58926600	Weak transcription	HUES64 Cell Line	embryonic stem cell
30	chr8:58920400-58926400	Weak transcription	Gastric	stomach
31	chr8:58920400-58926400	Weak transcription	Lung	lung
32	chr8:58920400-58928800	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr8:58920600-58926800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr8:58920600-58929000	Weak transcription	Stomach Mucosa	stomach
35	chr8:58921600-58927400	Weak transcription	Fetal Kidney	kidney
36	chr8:58921600-58934200	Weak transcription	Pancreatic Islets	Pancreatic Islet
37	chr8:58921800-58928800	Weak transcription	Skeletal Muscle Female	skeletal muscle
38	chr8:58921800-58937400	Weak transcription	HSMMtube	muscle
39	chr8:58922000-58926400	Weak transcription	HUES6 Cell Line	embryonic stem cell
40	chr8:58922000-58926600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr8:58922000-58928800	Weak transcription	Colon Smooth Muscle	Colon
42	chr8:58922400-58926200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr8:58923000-58926600	Strong transcription	Fetal Brain Female	brain
44	chr8:58923200-58926200	Weak transcription	Fetal Brain Male	brain
45	chr8:58923400-58929000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr8:58923400-58937200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr8:58923600-58926800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
48	chr8:58923800-58926200	Strong transcription	Spleen	Spleen
49	chr8:58924000-58926200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr8:58924400-58927800	Enhancers	Right Atrium	heart

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