Variant report

Variant	rs1108188
Chromosome Location	chr8:58954614-58954615
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:58949470..58951996-chr8:58952987..58955730,2	MCF-7	breast:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10086632	0.81[CHB][hapmap]
rs10089259	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10091875	0.81[CHB][hapmap]
rs10099623	0.81[CHB][hapmap]
rs10504246	0.86[CHB][hapmap]
rs10957030	0.85[CEU][hapmap]
rs1105302	0.81[CHB][hapmap]
rs1106314	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11774174	0.85[CEU][hapmap]
rs11780747	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11781102	0.85[CEU][hapmap]
rs11781204	0.82[CEU][hapmap]
rs11783171	0.81[CHB][hapmap]
rs11997733	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11998721	0.85[CEU][hapmap]
rs12114432	0.85[CEU][hapmap]
rs13249102	0.81[CHB][hapmap]
rs13279262	0.81[CHB][hapmap]
rs16922937	0.85[CEU][hapmap]
rs16922943	0.85[CEU][hapmap]
rs16922946	0.85[CEU][hapmap]
rs28550347	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4407868	0.81[CHB][hapmap]
rs4452790	0.81[CHB][hapmap]
rs4524775	0.81[CHB][hapmap]
rs4524776	0.81[CHB][hapmap]
rs61126058	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6471679	0.85[CEU][hapmap]
rs67784763	0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs68143639	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6989512	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6989882	0.85[CEU][hapmap]
rs7000941	0.85[CEU][hapmap]
rs7006812	0.85[CHB][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7007800	0.85[CEU][hapmap]
rs7015049	0.85[CEU][hapmap]
rs72621433	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7812600	0.85[CEU][hapmap]
rs7813490	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7826402	0.81[CHB][hapmap]
rs7828423	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7832353	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7842565	0.81[CHB][hapmap]
rs7842966	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7845456	0.92[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs884135	0.82[CEU][hapmap]
rs884136	0.85[CEU][hapmap]
rs9297984	0.87[CHB][hapmap]
rs9694113	0.85[CEU][hapmap]
rs9694139	0.85[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831324	chr8:58844151-59045309	Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:58935600-58988800	Weak transcription	Aorta	Aorta
2	chr8:58944600-58963000	Weak transcription	Stomach Mucosa	stomach
3	chr8:58944800-58962800	Weak transcription	Gastric	stomach
4	chr8:58945400-58957800	Weak transcription	Pancreas	Pancrea
5	chr8:58946000-58960000	Weak transcription	Fetal Kidney	kidney
6	chr8:58948800-58959800	Weak transcription	Ovary	ovary
7	chr8:58949400-58966800	Weak transcription	Liver	Liver
8	chr8:58950000-58955200	Enhancers	Fetal Brain Male	brain
9	chr8:58951800-58963000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr8:58951800-58963200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr8:58952000-58956200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr8:58952000-58959800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr8:58952000-58964200	Weak transcription	Osteobl	bone
14	chr8:58952200-58955400	Weak transcription	Brain Cingulate Gyrus	brain
15	chr8:58952200-58955400	Weak transcription	Brain Substantia Nigra	brain
16	chr8:58952200-58960400	Weak transcription	Colon Smooth Muscle	Colon
17	chr8:58952200-58960600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr8:58952200-58960800	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr8:58952200-58961000	Weak transcription	Brain Germinal Matrix	brain
20	chr8:58952200-58961200	Weak transcription	Brain Anterior Caudate	brain
21	chr8:58952200-58962800	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr8:58952200-58986400	Weak transcription	Adipose Nuclei	Adipose
23	chr8:58952400-58955400	Weak transcription	Left Ventricle	heart
24	chr8:58952400-58955600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr8:58952400-58958800	Strong transcription	Fetal Muscle Trunk	muscle
26	chr8:58952400-58960200	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr8:58952400-58960800	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr8:58952600-58956000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr8:58952800-58979600	Weak transcription	HSMMtube	muscle
30	chr8:58953000-58960600	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr8:58953000-58960600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr8:58953200-58955000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr8:58953200-58955400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr8:58953800-58955000	Strong transcription	Stomach Smooth Muscle	stomach
35	chr8:58953800-58960200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr8:58954000-58955600	Enhancers	Fetal Brain Female	brain
37	chr8:58954000-58958000	Strong transcription	HSMM	muscle
38	chr8:58954200-58957600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
39	chr8:58954200-58961200	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr8:58954200-58962800	Weak transcription	Lung	lung
41	chr8:58954400-58955400	Weak transcription	Right Atrium	heart
42	chr8:58954400-58955600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr8:58954400-58956000	Enhancers	Fetal Heart	heart
44	chr8:58954400-58960400	Weak transcription	NHDF-Ad	bronchial
45	chr8:58954400-58960600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
46	chr8:58954400-58960800	Weak transcription	Spleen	Spleen
47	chr8:58954400-58962800	Weak transcription	Right Ventricle	heart
48	chr8:58954400-58973200	Weak transcription	Psoas Muscle	Psoas
49	chr8:58954600-58955000	Weak transcription	Fetal Muscle Leg	muscle
50	chr8:58954600-58955400	Genic enhancers	Cortex derived primary cultured neurospheres	brain

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