Variant report

Variant	rs4524775
Chromosome Location	chr8:58950461-58950462
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:58948042..58950902-chr8:58979793..58982678,2	MCF-7	breast:
2	chr8:58949470..58951996-chr8:58952987..58955730,2	MCF-7	breast:
3	chr8:58801373..58802969-chr8:58949244..58951710,2	MCF-7	breast:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10086632	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10089240	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10091875	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10099623	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10504246	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1105302	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1108188	0.81[CHB][hapmap]
rs11780747	0.81[CHB][hapmap]
rs11783171	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11998684	0.90[CEU][hapmap];0.88[EUR][1000 genomes]
rs12114333	0.84[EUR][1000 genomes]
rs13249102	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13252750	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13279262	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34915140	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35124619	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35856042	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4407868	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4452790	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4498527	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4524776	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55930039	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56128341	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57650783	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58124183	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60265023	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6994434	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6999606	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7009526	1.00[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7017824	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7826402	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7828423	0.81[CHB][hapmap]
rs7841308	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7841370	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7842565	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9297984	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831324	chr8:58844151-59045309	Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:58935600-58988800	Weak transcription	Aorta	Aorta
2	chr8:58943800-58951200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr8:58944000-58951400	Weak transcription	NHLF	lung
4	chr8:58944000-58951600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr8:58944600-58954400	Weak transcription	Fetal Intestine Small	intestine
6	chr8:58944600-58963000	Weak transcription	Stomach Mucosa	stomach
7	chr8:58944800-58962800	Weak transcription	Gastric	stomach
8	chr8:58945400-58952200	Weak transcription	HepG2	liver
9	chr8:58945400-58957800	Weak transcription	Pancreas	Pancrea
10	chr8:58945600-58951600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr8:58946000-58960000	Weak transcription	Fetal Kidney	kidney
12	chr8:58946600-58952800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr8:58946600-58953200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr8:58946800-58951600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr8:58947000-58954400	Weak transcription	Fetal Intestine Large	intestine
16	chr8:58947200-58951000	Weak transcription	Lung	lung
17	chr8:58947200-58951600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr8:58947400-58951000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr8:58947400-58953000	Enhancers	Fetal Heart	heart
20	chr8:58947600-58951200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr8:58948000-58951400	Enhancers	Cortex derived primary cultured neurospheres	brain
22	chr8:58948000-58951800	Enhancers	Psoas Muscle	Psoas
23	chr8:58948600-58951600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
24	chr8:58948600-58951600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr8:58948600-58951600	Weak transcription	Colon Smooth Muscle	Colon
26	chr8:58948800-58951000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr8:58948800-58951400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr8:58948800-58959800	Weak transcription	Ovary	ovary
29	chr8:58949400-58951000	Weak transcription	Fetal Muscle Trunk	muscle
30	chr8:58949400-58951800	Weak transcription	Right Ventricle	heart
31	chr8:58949400-58966800	Weak transcription	Liver	Liver
32	chr8:58949800-58952400	Enhancers	Left Ventricle	heart
33	chr8:58950000-58950600	Enhancers	Adipose Nuclei	Adipose
34	chr8:58950000-58950600	Enhancers	Spleen	Spleen
35	chr8:58950000-58951600	Enhancers	Brain Germinal Matrix	brain
36	chr8:58950000-58952000	Enhancers	Fetal Muscle Leg	muscle
37	chr8:58950000-58952400	Enhancers	HUES64 Cell Line	embryonic stem cell
38	chr8:58950000-58955200	Enhancers	Fetal Brain Male	brain
39	chr8:58950200-58950600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr8:58950200-58950600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr8:58950200-58950600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
42	chr8:58950200-58950600	Active TSS	Placenta Amnion	Placenta Amnion
43	chr8:58950200-58950600	Active TSS	Stomach Smooth Muscle	stomach
44	chr8:58950200-58950600	Flanking Active TSS	HSMM	muscle
45	chr8:58950200-58950600	Active TSS	NH-A	brain
46	chr8:58950200-58950800	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr8:58950200-58950800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr8:58950200-58951000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr8:58950200-58951400	Enhancers	iPS-20b Cell Line	embryonic stem cell
50	chr8:58950200-58951600	Enhancers	HSMMtube	muscle

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