Variant report

Variant	rs6994434
Chromosome Location	chr8:58946247-58946248
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:58943502..58945075-chr8:58945226..58947971,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000169122	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10086632	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10089240	0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10091875	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10099623	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10504246	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1105302	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11783171	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11998684	0.86[EUR][1000 genomes]
rs12114333	0.84[EUR][1000 genomes]
rs13249102	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13252750	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13279262	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34915140	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35124619	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35856042	0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4407868	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4452790	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4498527	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4524775	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4524776	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55930039	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56128341	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57650783	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58124183	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60265023	0.90[EUR][1000 genomes]
rs6999606	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7009526	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7017824	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7826402	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7841308	0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7841370	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7842565	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9297984	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831324	chr8:58844151-59045309	Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:58924400-58946400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr8:58927000-58948000	Weak transcription	Fetal Brain Male	brain
3	chr8:58935000-58948600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr8:58935000-58950200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr8:58935600-58988800	Weak transcription	Aorta	Aorta
6	chr8:58941800-58946400	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr8:58943200-58948200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr8:58943200-58950400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr8:58943800-58946600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr8:58943800-58949600	Weak transcription	Placenta	Placenta
11	chr8:58943800-58950000	Weak transcription	Adipose Nuclei	Adipose
12	chr8:58943800-58951200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr8:58944000-58946400	Weak transcription	Brain Hippocampus Middle	brain
14	chr8:58944000-58946400	Weak transcription	Left Ventricle	heart
15	chr8:58944000-58946400	Weak transcription	Right Atrium	heart
16	chr8:58944000-58946400	Weak transcription	Right Ventricle	heart
17	chr8:58944000-58949400	Strong transcription	Fetal Muscle Trunk	muscle
18	chr8:58944000-58950200	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr8:58944000-58950200	Weak transcription	Brain Substantia Nigra	brain
20	chr8:58944000-58950200	Weak transcription	HSMMtube	muscle
21	chr8:58944000-58950400	Weak transcription	Brain Anterior Caudate	brain
22	chr8:58944000-58950400	Weak transcription	Brain Cingulate Gyrus	brain
23	chr8:58944000-58951400	Weak transcription	NHLF	lung
24	chr8:58944000-58951600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr8:58944200-58950000	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr8:58944200-58950000	Weak transcription	NHDF-Ad	bronchial
27	chr8:58944400-58946400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr8:58944400-58947200	Strong transcription	Fetal Brain Female	brain
29	chr8:58944400-58948800	Strong transcription	Fetal Stomach	stomach
30	chr8:58944400-58949000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr8:58944400-58949400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr8:58944600-58946600	Weak transcription	Colon Smooth Muscle	Colon
33	chr8:58944600-58947600	Strong transcription	HSMM	muscle
34	chr8:58944600-58948400	Weak transcription	Ovary	ovary
35	chr8:58944600-58954400	Weak transcription	Fetal Intestine Small	intestine
36	chr8:58944600-58963000	Weak transcription	Stomach Mucosa	stomach
37	chr8:58944800-58946400	Strong transcription	Fetal Muscle Leg	muscle
38	chr8:58944800-58946400	Weak transcription	Psoas Muscle	Psoas
39	chr8:58944800-58962800	Weak transcription	Gastric	stomach
40	chr8:58945000-58947000	Enhancers	Spleen	Spleen
41	chr8:58945200-58946600	Weak transcription	Stomach Smooth Muscle	stomach
42	chr8:58945200-58947600	Genic enhancers	Cortex derived primary cultured neurospheres	brain
43	chr8:58945200-58948400	Strong transcription	Fetal Lung	lung
44	chr8:58945400-58946400	Weak transcription	Liver	Liver
45	chr8:58945400-58946400	Weak transcription	Lung	lung
46	chr8:58945400-58952200	Weak transcription	HepG2	liver
47	chr8:58945400-58957800	Weak transcription	Pancreas	Pancrea
48	chr8:58945600-58951600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
49	chr8:58945800-58946600	Enhancers	Fetal Heart	heart
50	chr8:58945800-58947000	Strong transcription	Fetal Intestine Large	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links