Variant report

Variant	rs58124183
Chromosome Location	chr8:58938782-58938783
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:58928682..58930900-chr8:58937959..58939747,2	MCF-7	breast:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10086632	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10089240	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10089259	0.93[AFR][1000 genomes]
rs10091875	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10099623	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10504246	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1105302	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11780747	0.80[ASN][1000 genomes]
rs11783171	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11997733	0.80[ASN][1000 genomes]
rs11998684	0.86[EUR][1000 genomes]
rs12114333	0.80[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs13249102	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13252750	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13279262	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28550347	0.80[ASN][1000 genomes]
rs34915140	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35124619	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35856042	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4407868	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4452790	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4498527	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4524775	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4524776	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55930039	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56128341	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57650783	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60265023	0.90[EUR][1000 genomes]
rs61126058	0.80[ASN][1000 genomes]
rs68143639	0.80[ASN][1000 genomes]
rs6994434	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6999606	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7006812	0.93[AFR][1000 genomes]
rs7009526	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7017824	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72621433	0.80[ASN][1000 genomes]
rs7826402	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7828423	0.80[ASN][1000 genomes]
rs7841308	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7841370	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7842565	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9297984	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831324	chr8:58844151-59045309	Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:58908600-58942800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr8:58909400-58943000	Weak transcription	Brain Cingulate Gyrus	brain
3	chr8:58924400-58946400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr8:58926600-58942000	Weak transcription	HSMM	muscle
5	chr8:58927000-58943000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr8:58927000-58948000	Weak transcription	Fetal Brain Male	brain
7	chr8:58929400-58943200	Weak transcription	Fetal Stomach	stomach
8	chr8:58929400-58944000	Weak transcription	Fetal Muscle Trunk	muscle
9	chr8:58929400-58944400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr8:58929800-58942600	Weak transcription	Fetal Brain Female	brain
11	chr8:58930200-58941400	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr8:58930400-58941400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr8:58935000-58948600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr8:58935000-58950200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr8:58935600-58941200	Weak transcription	Fetal Muscle Leg	muscle
16	chr8:58935600-58988800	Weak transcription	Aorta	Aorta
17	chr8:58936200-58938800	Enhancers	Fetal Heart	heart
18	chr8:58936200-58941400	Weak transcription	Liver	Liver
19	chr8:58936200-58944600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr8:58936400-58941400	Weak transcription	Stomach Smooth Muscle	stomach
21	chr8:58936400-58941800	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr8:58936400-58942200	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr8:58936400-58943000	Weak transcription	Fetal Lung	lung
24	chr8:58936400-58945200	Weak transcription	Fetal Kidney	kidney
25	chr8:58936600-58943400	Weak transcription	Adipose Nuclei	Adipose
26	chr8:58937200-58939600	Enhancers	Psoas Muscle	Psoas
27	chr8:58937600-58942800	Weak transcription	HSMMtube	muscle
28	chr8:58937600-58943000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr8:58938000-58941400	Weak transcription	Lung	lung
30	chr8:58938000-58943200	Weak transcription	Left Ventricle	heart
31	chr8:58938000-58943400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr8:58938000-58943400	Weak transcription	Pancreas	Pancrea
33	chr8:58938200-58941400	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr8:58938200-58941400	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr8:58938200-58943000	Weak transcription	Right Atrium	heart
36	chr8:58938400-58943200	Weak transcription	Right Ventricle	heart
37	chr8:58938600-58940800	Weak transcription	Ovary	ovary
38	chr8:58938600-58941400	Weak transcription	Colon Smooth Muscle	Colon
39	chr8:58938600-58941400	Weak transcription	Spleen	Spleen

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