Variant report

Variant	rs7017824
Chromosome Location	chr8:58930847-58930848
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:58928682..58930900-chr8:58937959..58939747,2	MCF-7	breast:
2	chr8:58930083..58932759-chr8:58948299..58949930,2	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10086632	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10089240	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10089259	0.86[CHB][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs10091875	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10099623	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10504246	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1105302	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11783171	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11998684	0.89[CEU][hapmap];0.84[EUR][1000 genomes]
rs12114333	0.85[EUR][1000 genomes]
rs13249102	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13252750	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13279262	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34915140	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35124619	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35856042	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4407868	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4452790	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4498527	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4524775	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4524776	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55930039	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56128341	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57650783	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58124183	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60265023	0.88[EUR][1000 genomes]
rs6994434	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6999606	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7006812	0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs7009526	1.00[CEU][hapmap];0.93[CHB][hapmap];0.93[JPT][hapmap];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7813490	0.86[CHB][hapmap]
rs7826402	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7832353	0.86[CHB][hapmap];0.84[YRI][hapmap]
rs7841308	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7841370	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7842565	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7845456	0.86[CHB][hapmap]
rs9297984	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831324	chr8:58844151-59045309	Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:58908600-58942800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr8:58909400-58943000	Weak transcription	Brain Cingulate Gyrus	brain
3	chr8:58916400-58934600	Weak transcription	Brain Anterior Caudate	brain
4	chr8:58921600-58934200	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr8:58921800-58937400	Weak transcription	HSMMtube	muscle
6	chr8:58923400-58937200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr8:58924400-58946400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr8:58926600-58934400	Weak transcription	Aorta	Aorta
9	chr8:58926600-58942000	Weak transcription	HSMM	muscle
10	chr8:58926800-58937600	Weak transcription	Spleen	Spleen
11	chr8:58927000-58943000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr8:58927000-58948000	Weak transcription	Fetal Brain Male	brain
13	chr8:58927200-58932000	Weak transcription	Fetal Lung	lung
14	chr8:58927200-58934400	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr8:58929400-58931000	Weak transcription	Brain Hippocampus Middle	brain
16	chr8:58929400-58937800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr8:58929400-58943200	Weak transcription	Fetal Stomach	stomach
18	chr8:58929400-58944000	Weak transcription	Fetal Muscle Trunk	muscle
19	chr8:58929400-58944400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr8:58929600-58933800	Weak transcription	GM12878-XiMat	blood
21	chr8:58929600-58934600	Weak transcription	Colon Smooth Muscle	Colon
22	chr8:58929600-58934600	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr8:58929600-58934800	Weak transcription	Adipose Nuclei	Adipose
24	chr8:58929600-58934800	Weak transcription	Ovary	ovary
25	chr8:58929600-58935400	Weak transcription	Stomach Smooth Muscle	stomach
26	chr8:58929600-58936000	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr8:58929600-58936200	Weak transcription	Fetal Heart	heart
28	chr8:58929800-58934400	Weak transcription	Fetal Muscle Leg	muscle
29	chr8:58929800-58934400	Weak transcription	Right Atrium	heart
30	chr8:58929800-58934600	Weak transcription	Right Ventricle	heart
31	chr8:58929800-58935200	Weak transcription	Liver	Liver
32	chr8:58929800-58942600	Weak transcription	Fetal Brain Female	brain
33	chr8:58930000-58934400	Weak transcription	Left Ventricle	heart
34	chr8:58930200-58941400	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr8:58930400-58941400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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