Variant report

Variant	rs7009526
Chromosome Location	chr8:58924194-58924195
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10086632	1.00[CEU][hapmap];0.93[CHB][hapmap];0.93[GIH][hapmap];0.94[JPT][hapmap];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10089240	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[GIH][hapmap];0.94[JPT][hapmap];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10091875	1.00[CEU][hapmap];0.93[CHB][hapmap];0.81[GIH][hapmap];0.94[JPT][hapmap];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10099623	1.00[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10504246	1.00[CEU][hapmap];0.86[CHB][hapmap];0.81[GIH][hapmap];0.94[JPT][hapmap];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1105302	1.00[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11783171	1.00[CEU][hapmap];0.93[CHB][hapmap];0.93[JPT][hapmap];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11998684	0.90[CEU][hapmap];0.83[EUR][1000 genomes]
rs12114333	0.84[EUR][1000 genomes]
rs13249102	1.00[CEU][hapmap];0.93[CHB][hapmap];0.93[GIH][hapmap];0.94[JPT][hapmap];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13252750	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13279262	1.00[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34915140	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35124619	0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35856042	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4407868	1.00[CEU][hapmap];0.93[CHB][hapmap];0.90[GIH][hapmap];0.94[JPT][hapmap];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4452790	1.00[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4498527	1.00[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4524775	1.00[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4524776	1.00[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55930039	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56128341	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57650783	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58124183	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60265023	0.87[EUR][1000 genomes]
rs6994434	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6999606	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7017824	1.00[CEU][hapmap];0.93[CHB][hapmap];0.93[JPT][hapmap];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7813490	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs7826402	1.00[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];0.89[YRI][hapmap];0.83[AFR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7841308	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[GIH][hapmap];0.94[JPT][hapmap];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7841370	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7842565	1.00[CEU][hapmap];0.93[CHB][hapmap];0.89[GIH][hapmap];0.94[JPT][hapmap];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9297984	1.00[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831324	chr8:58844151-59045309	Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:58908400-58926400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr8:58908400-58928800	Weak transcription	Esophagus	oesophagus
3	chr8:58908400-58929000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr8:58908600-58942800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr8:58908800-58929200	Weak transcription	Brain Substantia Nigra	brain
6	chr8:58909400-58928800	Weak transcription	Fetal Intestine Large	intestine
7	chr8:58909400-58943000	Weak transcription	Brain Cingulate Gyrus	brain
8	chr8:58913400-58929000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr8:58914200-58929000	Weak transcription	Rectal Smooth Muscle	rectum
10	chr8:58914600-58924600	Strong transcription	HSMM	muscle
11	chr8:58916000-58924200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr8:58916200-58926400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr8:58916400-58926600	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr8:58916400-58929000	Weak transcription	NHDF-Ad	bronchial
15	chr8:58916400-58929200	Weak transcription	Brain Hippocampus Middle	brain
16	chr8:58916400-58934600	Weak transcription	Brain Anterior Caudate	brain
17	chr8:58916600-58926400	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr8:58916600-58926400	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr8:58916600-58929000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr8:58916600-58929200	Weak transcription	Osteobl	bone
21	chr8:58916800-58926000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr8:58916800-58928800	Weak transcription	Psoas Muscle	Psoas
23	chr8:58916800-58929200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr8:58917000-58925000	Strong transcription	Fetal Muscle Trunk	muscle
25	chr8:58917000-58926000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr8:58917000-58926400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr8:58917000-58927200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr8:58917400-58925400	Strong transcription	Cortex derived primary cultured neurospheres	brain
29	chr8:58917600-58924800	Strong transcription	Fetal Lung	lung
30	chr8:58917600-58925400	Strong transcription	Fetal Muscle Leg	muscle
31	chr8:58917600-58928000	Weak transcription	Fetal Intestine Small	intestine
32	chr8:58918400-58926400	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr8:58918400-58927000	Strong transcription	Fetal Stomach	stomach
34	chr8:58918800-58924400	Strong transcription	Liver	Liver
35	chr8:58918800-58926400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr8:58919200-58924600	Strong transcription	Ovary	ovary
37	chr8:58919400-58926200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr8:58919600-58924400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr8:58919600-58925000	Strong transcription	Stomach Smooth Muscle	stomach
40	chr8:58920000-58924800	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr8:58920000-58924800	Weak transcription	Placenta	Placenta
42	chr8:58920000-58929000	Weak transcription	Pancreas	Pancrea
43	chr8:58920200-58926600	Weak transcription	HUES64 Cell Line	embryonic stem cell
44	chr8:58920400-58925400	Weak transcription	Skeletal Muscle Male	skeletal muscle
45	chr8:58920400-58926400	Weak transcription	Gastric	stomach
46	chr8:58920400-58926400	Weak transcription	Lung	lung
47	chr8:58920400-58928800	Weak transcription	Duodenum Smooth Muscle	Duodenum
48	chr8:58920600-58926800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr8:58920600-58929000	Weak transcription	Stomach Mucosa	stomach
50	chr8:58921600-58927400	Weak transcription	Fetal Kidney	kidney

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