Variant report

Variant	rs4452790
Chromosome Location	chr8:58949266-58949267
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr8:58949205-58949315	NB4	blood:	n/a	chr8:58949243-58949253 chr8:58949229-58949239
2	FOXA1	chr8:58949143-58949397	HepG2	liver:	n/a	n/a
3	FOXA2	chr8:58949238-58949418	HepG2	liver:	n/a	n/a
4	FOXA1	chr8:58949179-58949434	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr8:58948042..58950902-chr8:58979793..58982678,2	MCF-7	breast:
2	chr8:58801373..58802969-chr8:58949244..58951710,2	MCF-7	breast:
3	chr8:58930083..58932759-chr8:58948299..58949930,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000253523	TF binding region

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10086632	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10089240	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10091875	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10099623	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10504246	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1105302	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1108188	0.81[CHB][hapmap]
rs11780747	0.81[CHB][hapmap]
rs11783171	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11998684	0.90[CEU][hapmap];0.87[EUR][1000 genomes]
rs12114333	0.83[EUR][1000 genomes]
rs13249102	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13252750	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13279262	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34915140	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35124619	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35856042	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4407868	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4498527	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4524775	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4524776	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55930039	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56128341	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57650783	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58124183	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60265023	0.98[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6994434	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6999606	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7009526	1.00[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7017824	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7826402	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7828423	0.81[CHB][hapmap]
rs7841308	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7841370	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7842565	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9297984	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831324	chr8:58844151-59045309	Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:58935000-58950200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr8:58935600-58988800	Weak transcription	Aorta	Aorta
3	chr8:58943200-58950400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr8:58943800-58949600	Weak transcription	Placenta	Placenta
5	chr8:58943800-58950000	Weak transcription	Adipose Nuclei	Adipose
6	chr8:58943800-58951200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr8:58944000-58949400	Strong transcription	Fetal Muscle Trunk	muscle
8	chr8:58944000-58950200	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr8:58944000-58950200	Weak transcription	Brain Substantia Nigra	brain
10	chr8:58944000-58950200	Weak transcription	HSMMtube	muscle
11	chr8:58944000-58950400	Weak transcription	Brain Anterior Caudate	brain
12	chr8:58944000-58950400	Weak transcription	Brain Cingulate Gyrus	brain
13	chr8:58944000-58951400	Weak transcription	NHLF	lung
14	chr8:58944000-58951600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr8:58944200-58950000	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr8:58944200-58950000	Weak transcription	NHDF-Ad	bronchial
17	chr8:58944400-58949400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr8:58944600-58954400	Weak transcription	Fetal Intestine Small	intestine
19	chr8:58944600-58963000	Weak transcription	Stomach Mucosa	stomach
20	chr8:58944800-58962800	Weak transcription	Gastric	stomach
21	chr8:58945400-58952200	Weak transcription	HepG2	liver
22	chr8:58945400-58957800	Weak transcription	Pancreas	Pancrea
23	chr8:58945600-58951600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr8:58945800-58950000	Weak transcription	Brain Germinal Matrix	brain
25	chr8:58946000-58960000	Weak transcription	Fetal Kidney	kidney
26	chr8:58946200-58950200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr8:58946600-58952800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr8:58946600-58953200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr8:58946800-58951600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr8:58947000-58950200	Weak transcription	Brain Hippocampus Middle	brain
31	chr8:58947000-58954400	Weak transcription	Fetal Intestine Large	intestine
32	chr8:58947200-58950200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr8:58947200-58951000	Weak transcription	Lung	lung
34	chr8:58947200-58951600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr8:58947400-58950200	Weak transcription	Right Atrium	heart
36	chr8:58947400-58951000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr8:58947400-58953000	Enhancers	Fetal Heart	heart
38	chr8:58947600-58951200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr8:58948000-58949400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
40	chr8:58948000-58949400	Enhancers	Fetal Brain Female	brain
41	chr8:58948000-58949600	Enhancers	Fetal Brain Male	brain
42	chr8:58948000-58951400	Enhancers	Cortex derived primary cultured neurospheres	brain
43	chr8:58948000-58951800	Enhancers	Psoas Muscle	Psoas
44	chr8:58948400-58949400	Enhancers	Liver	Liver
45	chr8:58948400-58949400	Enhancers	Right Ventricle	heart
46	chr8:58948600-58950200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
47	chr8:58948600-58951600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
48	chr8:58948600-58951600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
49	chr8:58948600-58951600	Weak transcription	Colon Smooth Muscle	Colon
50	chr8:58948800-58950000	Weak transcription	Fetal Muscle Leg	muscle

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