Variant report

Variant	rs7845456
Chromosome Location	chr8:58913290-58913291
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10089259	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1106314	0.91[ASN][1000 genomes]
rs1108188	0.92[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs11780747	0.92[CHB][hapmap];0.92[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.86[ASN][1000 genomes]
rs11997733	0.92[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs28550347	0.86[ASN][1000 genomes]
rs61126058	0.86[ASN][1000 genomes]
rs67784763	0.93[ASN][1000 genomes]
rs68143639	0.86[ASN][1000 genomes]
rs6989512	0.93[ASN][1000 genomes]
rs7006812	0.92[CHB][hapmap];0.89[CHD][hapmap];0.88[ASN][1000 genomes]
rs7017824	0.86[CHB][hapmap]
rs72621433	0.86[ASN][1000 genomes]
rs7813490	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7828423	0.92[CHB][hapmap];0.92[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs7832353	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap];0.91[ASN][1000 genomes]
rs7842966	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831324	chr8:58844151-59045309	Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:58908200-58919600	Weak transcription	Gastric	stomach
2	chr8:58908400-58914600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr8:58908400-58916800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr8:58908400-58919400	Weak transcription	Placenta	Placenta
5	chr8:58908400-58919400	Weak transcription	Pancreas	Pancrea
6	chr8:58908400-58919600	Weak transcription	Lung	lung
7	chr8:58908400-58920000	Weak transcription	Spleen	Spleen
8	chr8:58908400-58926400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr8:58908400-58928800	Weak transcription	Esophagus	oesophagus
10	chr8:58908400-58929000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr8:58908600-58915400	Weak transcription	Ovary	ovary
12	chr8:58908600-58915600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr8:58908600-58942800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr8:58908800-58929200	Weak transcription	Brain Substantia Nigra	brain
15	chr8:58909200-58915000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr8:58909200-58917200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr8:58909200-58919600	Weak transcription	Brain Angular Gyrus	brain
18	chr8:58909400-58914800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr8:58909400-58916000	Weak transcription	Left Ventricle	heart
20	chr8:58909400-58920000	Weak transcription	Stomach Mucosa	stomach
21	chr8:58909400-58928800	Weak transcription	Fetal Intestine Large	intestine
22	chr8:58909400-58943000	Weak transcription	Brain Cingulate Gyrus	brain
23	chr8:58909600-58913800	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr8:58909600-58915000	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr8:58909600-58915800	Weak transcription	Brain Hippocampus Middle	brain
26	chr8:58909800-58913800	Weak transcription	Psoas Muscle	Psoas
27	chr8:58909800-58914400	Weak transcription	Fetal Muscle Trunk	muscle
28	chr8:58909800-58914600	Weak transcription	Adipose Nuclei	Adipose
29	chr8:58909800-58915400	Weak transcription	Fetal Kidney	kidney
30	chr8:58909800-58919800	Weak transcription	Right Ventricle	heart
31	chr8:58909800-58921600	Weak transcription	Placenta Amnion	Placenta Amnion
32	chr8:58910000-58913400	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr8:58910000-58915800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
34	chr8:58910000-58919200	Weak transcription	Aorta	Aorta
35	chr8:58910200-58914600	Weak transcription	HUES6 Cell Line	embryonic stem cell
36	chr8:58910200-58915600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
37	chr8:58910200-58915800	Weak transcription	HUES48 Cell Line	embryonic stem cell
38	chr8:58910400-58913400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr8:58910400-58916000	Weak transcription	Stomach Smooth Muscle	stomach
40	chr8:58910600-58914400	Weak transcription	Liver	Liver
41	chr8:58910600-58915000	Weak transcription	Fetal Stomach	stomach
42	chr8:58910600-58915000	Weak transcription	NHDF-Ad	bronchial
43	chr8:58910600-58915400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr8:58910600-58915600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
45	chr8:58910600-58916000	Weak transcription	NHLF	lung
46	chr8:58910800-58913400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr8:58910800-58913800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr8:58910800-58914200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
49	chr8:58910800-58914400	Weak transcription	Fetal Brain Male	brain
50	chr8:58910800-58914400	Weak transcription	Fetal Lung	lung

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