Variant report

Variant	rs16923081
Chromosome Location	chr8:59035699-59035700
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:59035101..59037802-chr8:59049152..59050739,2	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10096582	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10106186	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs10109756	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs10110195	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes]
rs10113330	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs10957030	1.00[CHD][hapmap];1.00[MEX][hapmap]
rs11986581	1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs12114432	1.00[CHD][hapmap];1.00[MEX][hapmap]
rs16918702	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16923089	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs56288562	0.82[EUR][1000 genomes]
rs57239755	0.87[EUR][1000 genomes]
rs59375037	0.87[EUR][1000 genomes]
rs60139253	0.87[EUR][1000 genomes]
rs60839707	0.87[EUR][1000 genomes]
rs61406356	0.87[EUR][1000 genomes]
rs61610794	0.87[EUR][1000 genomes]
rs7015049	1.00[CHD][hapmap];1.00[MEX][hapmap]
rs73682130	0.82[EUR][1000 genomes]
rs73682133	0.82[EUR][1000 genomes]
rs73682134	0.87[EUR][1000 genomes]
rs73682136	0.87[EUR][1000 genomes]
rs73682137	0.87[EUR][1000 genomes]
rs73682138	0.87[EUR][1000 genomes]
rs73682140	0.87[EUR][1000 genomes]
rs73682141	0.87[EUR][1000 genomes]
rs73682142	0.87[EUR][1000 genomes]
rs73682143	0.87[EUR][1000 genomes]
rs73682145	0.87[EUR][1000 genomes]
rs73682146	0.87[EUR][1000 genomes]
rs73682149	0.87[EUR][1000 genomes]
rs73682150	0.87[EUR][1000 genomes]
rs73682153	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831324	chr8:58844151-59045309	Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59011600-59044800	Weak transcription	Spleen	Spleen
2	chr8:59015200-59058200	Weak transcription	Aorta	Aorta
3	chr8:59015400-59036400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr8:59015400-59037000	Weak transcription	Psoas Muscle	Psoas
5	chr8:59016600-59046200	Weak transcription	Fetal Brain Male	brain
6	chr8:59019400-59036800	Weak transcription	Fetal Kidney	kidney
7	chr8:59021800-59040600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr8:59021800-59044200	Weak transcription	Fetal Lung	lung
9	chr8:59022400-59050000	Weak transcription	Ovary	ovary
10	chr8:59026000-59050600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr8:59026200-59049800	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr8:59028000-59040800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr8:59028600-59042000	Weak transcription	Lung	lung
14	chr8:59028800-59040600	Weak transcription	NHDF-Ad	bronchial
15	chr8:59029000-59058000	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr8:59031400-59035800	Enhancers	HepG2	liver
17	chr8:59032000-59047200	Weak transcription	Liver	Liver
18	chr8:59032000-59049200	Weak transcription	Brain Hippocampus Middle	brain
19	chr8:59032200-59036000	Enhancers	Fetal Heart	heart
20	chr8:59033200-59045800	Weak transcription	Stomach Smooth Muscle	stomach
21	chr8:59033600-59036000	Enhancers	HSMM	muscle
22	chr8:59033600-59036400	Weak transcription	Brain Germinal Matrix	brain
23	chr8:59033800-59042000	Weak transcription	Fetal Stomach	stomach
24	chr8:59033800-59044800	Weak transcription	Fetal Muscle Trunk	muscle
25	chr8:59033800-59046000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr8:59033800-59050200	Weak transcription	Pancreas	Pancrea
27	chr8:59034600-59036200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr8:59034600-59036800	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr8:59034600-59040600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr8:59034600-59040800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr8:59034800-59042200	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr8:59034800-59054200	Weak transcription	Fetal Brain Female	brain
33	chr8:59035200-59035800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr8:59035200-59035800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr8:59035200-59036000	Enhancers	Primary monocytes fromperipheralblood	blood
36	chr8:59035200-59036000	Enhancers	Primary B cells from peripheral blood	blood
37	chr8:59035200-59036000	Enhancers	Fetal Muscle Leg	muscle
38	chr8:59035200-59036000	Enhancers	Monocytes-CD14+_RO01746	blood
39	chr8:59035400-59035800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr8:59035400-59035800	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
41	chr8:59035400-59035800	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
42	chr8:59035400-59035800	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
43	chr8:59035400-59035800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
44	chr8:59035400-59035800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr8:59035400-59035800	Enhancers	Gastric	stomach
46	chr8:59035400-59035800	Enhancers	Right Atrium	heart
47	chr8:59035400-59036000	Enhancers	ES-I3 Cell Line	embryonic stem cell
48	chr8:59035400-59036000	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
49	chr8:59035400-59036000	Enhancers	H9 Cell Line	embryonic stem cell
50	chr8:59035400-59036000	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell

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