Variant report

Variant	rs10109756
Chromosome Location	chr8:59046491-59046492
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10096582	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs10106186	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10110195	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs10113330	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11986581	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16918702	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16923081	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs16923089	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56288562	0.82[EUR][1000 genomes]
rs57239755	0.87[EUR][1000 genomes]
rs59375037	0.87[EUR][1000 genomes]
rs60139253	0.87[EUR][1000 genomes]
rs60839707	0.87[EUR][1000 genomes]
rs61406356	0.87[EUR][1000 genomes]
rs61610794	0.87[EUR][1000 genomes]
rs73682130	0.82[EUR][1000 genomes]
rs73682133	0.82[EUR][1000 genomes]
rs73682134	0.87[EUR][1000 genomes]
rs73682136	0.87[EUR][1000 genomes]
rs73682137	0.87[EUR][1000 genomes]
rs73682138	0.87[EUR][1000 genomes]
rs73682140	0.87[EUR][1000 genomes]
rs73682141	0.87[EUR][1000 genomes]
rs73682142	0.87[EUR][1000 genomes]
rs73682143	0.87[EUR][1000 genomes]
rs73682145	0.87[EUR][1000 genomes]
rs73682146	0.87[EUR][1000 genomes]
rs73682149	0.87[EUR][1000 genomes]
rs73682150	0.87[EUR][1000 genomes]
rs73682153	0.87[EUR][1000 genomes]

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59015200-59058200	Weak transcription	Aorta	Aorta
2	chr8:59022400-59050000	Weak transcription	Ovary	ovary
3	chr8:59026000-59050600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr8:59026200-59049800	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr8:59029000-59058000	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr8:59032000-59047200	Weak transcription	Liver	Liver
7	chr8:59032000-59049200	Weak transcription	Brain Hippocampus Middle	brain
8	chr8:59033800-59050200	Weak transcription	Pancreas	Pancrea
9	chr8:59034800-59054200	Weak transcription	Fetal Brain Female	brain
10	chr8:59037200-59049200	Weak transcription	Brain Substantia Nigra	brain
11	chr8:59041400-59048200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr8:59041800-59058000	Weak transcription	Colon Smooth Muscle	Colon
13	chr8:59042200-59050200	Weak transcription	Lung	lung
14	chr8:59043200-59046600	Weak transcription	Fetal Heart	heart
15	chr8:59043200-59049000	Weak transcription	NHLF	lung
16	chr8:59043600-59049000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr8:59043600-59049000	Weak transcription	Osteobl	bone
18	chr8:59043600-59052600	Weak transcription	Esophagus	oesophagus
19	chr8:59044000-59048800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr8:59044000-59048800	Weak transcription	HSMM	muscle
21	chr8:59044000-59048800	Weak transcription	NHDF-Ad	bronchial
22	chr8:59044000-59049400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr8:59044000-59049600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr8:59044000-59050200	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr8:59044000-59052600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr8:59044000-59058000	Weak transcription	HSMMtube	muscle
27	chr8:59044400-59053400	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr8:59044600-59048800	Weak transcription	HepG2	liver
29	chr8:59044600-59049200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr8:59045000-59046600	Enhancers	Skeletal Muscle Male	skeletal muscle
31	chr8:59045000-59048200	Weak transcription	Fetal Lung	lung
32	chr8:59045000-59049400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr8:59045000-59053000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr8:59045000-59058000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr8:59045200-59050600	Weak transcription	Cortex derived primary cultured neurospheres	brain
36	chr8:59045200-59058000	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr8:59046200-59050200	Weak transcription	Fetal Muscle Leg	muscle
38	chr8:59046200-59050400	Weak transcription	Stomach Smooth Muscle	stomach
39	chr8:59046400-59048200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr8:59046400-59050000	Weak transcription	Fetal Stomach	stomach
41	chr8:59046400-59050400	Weak transcription	Fetal Muscle Trunk	muscle
42	chr8:59046400-59050400	Weak transcription	Left Ventricle	heart
43	chr8:59046400-59050400	Weak transcription	Spleen	Spleen
44	chr8:59046400-59050600	Weak transcription	Right Atrium	heart
45	chr8:59046400-59050800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr8:59046400-59052800	Weak transcription	Right Ventricle	heart
47	chr8:59046400-59054200	Weak transcription	Psoas Muscle	Psoas
48	chr8:59046400-59058000	Weak transcription	Fetal Brain Male	brain
49	chr8:59046400-59058000	Weak transcription	Gastric	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links