Variant report

Variant	rs11986581
Chromosome Location	chr8:59042756-59042757
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:59041929..59045530-chr8:59049327..59051439,4	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10096582	1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs10106186	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10109756	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10110195	1.00[TSI][hapmap];0.82[EUR][1000 genomes]
rs10113330	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16918702	1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16923081	1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs16923089	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56288562	0.82[EUR][1000 genomes]
rs57239755	0.87[EUR][1000 genomes]
rs59375037	0.87[EUR][1000 genomes]
rs60139253	0.87[EUR][1000 genomes]
rs60839707	0.87[EUR][1000 genomes]
rs61406356	0.87[EUR][1000 genomes]
rs61610794	0.87[EUR][1000 genomes]
rs73682130	0.82[EUR][1000 genomes]
rs73682133	0.82[EUR][1000 genomes]
rs73682134	0.87[EUR][1000 genomes]
rs73682136	0.87[EUR][1000 genomes]
rs73682137	0.87[EUR][1000 genomes]
rs73682138	0.87[EUR][1000 genomes]
rs73682140	0.87[EUR][1000 genomes]
rs73682141	0.87[EUR][1000 genomes]
rs73682142	0.87[EUR][1000 genomes]
rs73682143	0.87[EUR][1000 genomes]
rs73682145	0.87[EUR][1000 genomes]
rs73682146	0.87[EUR][1000 genomes]
rs73682149	0.87[EUR][1000 genomes]
rs73682150	0.87[EUR][1000 genomes]
rs73682153	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831324	chr8:58844151-59045309	Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59011600-59044800	Weak transcription	Spleen	Spleen
2	chr8:59015200-59058200	Weak transcription	Aorta	Aorta
3	chr8:59016600-59046200	Weak transcription	Fetal Brain Male	brain
4	chr8:59021800-59044200	Weak transcription	Fetal Lung	lung
5	chr8:59022400-59050000	Weak transcription	Ovary	ovary
6	chr8:59026000-59050600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr8:59026200-59049800	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr8:59029000-59058000	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr8:59032000-59047200	Weak transcription	Liver	Liver
10	chr8:59032000-59049200	Weak transcription	Brain Hippocampus Middle	brain
11	chr8:59033200-59045800	Weak transcription	Stomach Smooth Muscle	stomach
12	chr8:59033800-59044800	Weak transcription	Fetal Muscle Trunk	muscle
13	chr8:59033800-59046000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr8:59033800-59050200	Weak transcription	Pancreas	Pancrea
15	chr8:59034800-59054200	Weak transcription	Fetal Brain Female	brain
16	chr8:59035600-59043000	Weak transcription	HSMMtube	muscle
17	chr8:59035800-59044800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr8:59036000-59044600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr8:59036200-59043600	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr8:59036800-59042800	Weak transcription	HepG2	liver
21	chr8:59037200-59049200	Weak transcription	Brain Substantia Nigra	brain
22	chr8:59040200-59044000	Enhancers	Primary monocytes fromperipheralblood	blood
23	chr8:59040800-59044000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr8:59040800-59045200	Enhancers	Breast Myoepithelial Primary Cells	Breast
25	chr8:59041000-59043200	Enhancers	Fetal Heart	heart
26	chr8:59041000-59044800	Weak transcription	Psoas Muscle	Psoas
27	chr8:59041200-59043800	Enhancers	Monocytes-CD14+_RO01746	blood
28	chr8:59041200-59044000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr8:59041200-59044000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr8:59041200-59044400	Enhancers	HMEC	breast
31	chr8:59041400-59043200	Enhancers	Hela-S3	cervix
32	chr8:59041400-59044000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr8:59041400-59044200	Enhancers	NHEK	skin
34	chr8:59041400-59044400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr8:59041400-59048200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
36	chr8:59041600-59042800	Weak transcription	Muscle Satellite Cultured Cells	--
37	chr8:59041600-59042800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr8:59041600-59042800	Weak transcription	Osteobl	bone
39	chr8:59041600-59043200	Enhancers	Right Ventricle	heart
40	chr8:59041800-59043600	Enhancers	Left Ventricle	heart
41	chr8:59041800-59044000	Enhancers	HSMM	muscle
42	chr8:59041800-59058000	Weak transcription	Colon Smooth Muscle	Colon
43	chr8:59042000-59043000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr8:59042000-59043000	Weak transcription	Placenta Amnion	Placenta Amnion
45	chr8:59042000-59043200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr8:59042000-59043600	Enhancers	Right Atrium	heart
47	chr8:59042000-59043800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr8:59042000-59044000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr8:59042000-59044000	Enhancers	Placenta	Placenta
50	chr8:59042000-59044800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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