Variant report

Variant	rs60839707
Chromosome Location	chr8:59011608-59011609
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CYP7A1-2	chr8:59011483-59011696	ENSG00000253116

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10096582	0.87[EUR][1000 genomes]
rs10106186	0.87[EUR][1000 genomes]
rs10109756	0.87[EUR][1000 genomes]
rs10110195	0.94[EUR][1000 genomes]
rs10113330	0.87[EUR][1000 genomes]
rs11986581	0.87[EUR][1000 genomes]
rs16918702	0.87[EUR][1000 genomes]
rs16923081	0.87[EUR][1000 genomes]
rs16923089	0.87[EUR][1000 genomes]
rs56288562	0.94[EUR][1000 genomes]
rs57239755	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59375037	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60139253	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61406356	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61610794	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73682130	0.94[EUR][1000 genomes]
rs73682133	0.94[EUR][1000 genomes]
rs73682134	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73682136	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73682137	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73682138	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73682140	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73682141	1.00[EUR][1000 genomes]
rs73682142	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73682143	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73682145	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73682146	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73682149	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73682150	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73682152	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73682153	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9657060	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831324	chr8:58844151-59045309	Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:58989200-59014400	Weak transcription	Aorta	Aorta
2	chr8:59004800-59012400	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr8:59009400-59020800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr8:59010800-59011800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr8:59011000-59031600	Weak transcription	Liver	Liver
6	chr8:59011200-59012000	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr8:59011200-59014200	Weak transcription	Fetal Lung	lung
8	chr8:59011200-59014200	Weak transcription	Fetal Stomach	stomach
9	chr8:59011200-59014400	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr8:59011200-59014800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr8:59011400-59012000	Weak transcription	Pancreas	Pancrea
12	chr8:59011400-59014200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr8:59011400-59014400	Weak transcription	Fetal Brain Female	brain
14	chr8:59011400-59014400	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr8:59011400-59019000	Weak transcription	Ovary	ovary
16	chr8:59011400-59021000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr8:59011400-59028400	Weak transcription	Placenta	Placenta
18	chr8:59011400-59028800	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr8:59011400-59035400	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr8:59011600-59011800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr8:59011600-59011800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr8:59011600-59011800	Enhancers	Muscle Satellite Cultured Cells	--
23	chr8:59011600-59011800	Enhancers	HSMM	muscle
24	chr8:59011600-59011800	Enhancers	HSMMtube	muscle
25	chr8:59011600-59011800	Enhancers	NHDF-Ad	bronchial
26	chr8:59011600-59012600	Weak transcription	Fetal Heart	heart
27	chr8:59011600-59012800	Weak transcription	Fetal Muscle Leg	muscle
28	chr8:59011600-59014200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr8:59011600-59014200	Weak transcription	Brain Anterior Caudate	brain
30	chr8:59011600-59014200	Weak transcription	Psoas Muscle	Psoas
31	chr8:59011600-59014200	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr8:59011600-59014400	Weak transcription	Fetal Brain Male	brain
33	chr8:59011600-59014400	Weak transcription	NH-A	brain
34	chr8:59011600-59014600	Weak transcription	HUES48 Cell Line	embryonic stem cell
35	chr8:59011600-59015000	Weak transcription	Left Ventricle	heart
36	chr8:59011600-59015200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr8:59011600-59016200	Weak transcription	Right Ventricle	heart
38	chr8:59011600-59017600	Weak transcription	HUES6 Cell Line	embryonic stem cell
39	chr8:59011600-59017600	Weak transcription	Right Atrium	heart
40	chr8:59011600-59020800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr8:59011600-59021000	Weak transcription	Fetal Muscle Trunk	muscle
42	chr8:59011600-59021000	Weak transcription	Lung	lung
43	chr8:59011600-59025400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr8:59011600-59029400	Weak transcription	Adipose Nuclei	Adipose
45	chr8:59011600-59030800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
46	chr8:59011600-59031800	Weak transcription	Gastric	stomach
47	chr8:59011600-59044800	Weak transcription	Spleen	Spleen

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