Variant report

Variant	rs73682143
Chromosome Location	chr8:59004234-59004235
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10096582	0.87[EUR][1000 genomes]
rs10106186	0.87[EUR][1000 genomes]
rs10109756	0.87[EUR][1000 genomes]
rs10110195	0.94[EUR][1000 genomes]
rs10113330	0.87[EUR][1000 genomes]
rs11986581	0.87[EUR][1000 genomes]
rs16918702	0.87[EUR][1000 genomes]
rs16923081	0.87[EUR][1000 genomes]
rs16923089	0.87[EUR][1000 genomes]
rs56288562	0.94[EUR][1000 genomes]
rs57239755	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59375037	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60139253	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60839707	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61406356	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61610794	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73682130	0.94[EUR][1000 genomes]
rs73682133	0.94[EUR][1000 genomes]
rs73682134	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73682136	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73682137	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73682138	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73682140	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73682141	1.00[EUR][1000 genomes]
rs73682142	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73682145	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73682146	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73682149	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73682150	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73682152	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73682153	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9657060	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831324	chr8:58844151-59045309	Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:58987400-59010800	Weak transcription	Psoas Muscle	Psoas
2	chr8:58989200-59014400	Weak transcription	Aorta	Aorta
3	chr8:58990400-59004400	Weak transcription	Stomach Smooth Muscle	stomach
4	chr8:58992000-59004800	Weak transcription	HSMMtube	muscle
5	chr8:58992000-59007000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr8:58992200-59010800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr8:59000000-59010200	Weak transcription	HSMM	muscle
8	chr8:59000000-59010200	Weak transcription	NHDF-Ad	bronchial
9	chr8:59000000-59010800	Weak transcription	Fetal Lung	lung
10	chr8:59000200-59005400	Weak transcription	Fetal Muscle Trunk	muscle
11	chr8:59000200-59010400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr8:59000200-59010600	Weak transcription	Right Atrium	heart
13	chr8:59001200-59004600	Enhancers	Brain Germinal Matrix	brain
14	chr8:59002800-59004600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr8:59003000-59004400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr8:59003000-59004600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr8:59003200-59004400	Enhancers	Fetal Heart	heart
18	chr8:59003400-59004400	Enhancers	Cortex derived primary cultured neurospheres	brain
19	chr8:59003400-59004600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr8:59003400-59004800	Enhancers	Fetal Brain Female	brain
21	chr8:59003600-59004400	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr8:59003600-59004400	Enhancers	HUES64 Cell Line	embryonic stem cell
23	chr8:59003600-59004400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr8:59003600-59004400	Enhancers	Skeletal Muscle Male	skeletal muscle
25	chr8:59003600-59004400	Enhancers	Skeletal Muscle Female	skeletal muscle
26	chr8:59003600-59004600	Enhancers	iPS-20b Cell Line	embryonic stem cell
27	chr8:59003600-59004600	Enhancers	Fetal Kidney	kidney
28	chr8:59003800-59004400	Enhancers	iPS-18 Cell Line	embryonic stem cell
29	chr8:59003800-59004400	Enhancers	Duodenum Smooth Muscle	Duodenum
30	chr8:59003800-59004400	Enhancers	Fetal Stomach	stomach
31	chr8:59003800-59004600	Weak transcription	Pancreatic Islets	Pancreatic Islet
32	chr8:59003800-59005000	Enhancers	Fetal Brain Male	brain
33	chr8:59004000-59010400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr8:59004200-59004400	Enhancers	Brain Hippocampus Middle	brain
35	chr8:59004200-59007200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr8:59004200-59010400	Weak transcription	Left Ventricle	heart

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