Variant report

Variant	rs73682150
Chromosome Location	chr8:59017039-59017040
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:59015301..59017701-chr8:59049756..59052159,2	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10096582	0.87[EUR][1000 genomes]
rs10106186	0.87[EUR][1000 genomes]
rs10109756	0.87[EUR][1000 genomes]
rs10110195	0.94[EUR][1000 genomes]
rs10113330	0.87[EUR][1000 genomes]
rs11986581	0.87[EUR][1000 genomes]
rs16918702	0.87[EUR][1000 genomes]
rs16923081	0.87[EUR][1000 genomes]
rs16923089	0.87[EUR][1000 genomes]
rs56288562	0.94[EUR][1000 genomes]
rs57239755	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59375037	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60139253	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60839707	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61406356	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61610794	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73682130	0.94[EUR][1000 genomes]
rs73682133	0.94[EUR][1000 genomes]
rs73682134	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73682136	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73682137	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73682138	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73682140	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73682141	1.00[EUR][1000 genomes]
rs73682142	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73682143	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73682145	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73682146	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73682149	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73682152	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73682153	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9657060	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831324	chr8:58844151-59045309	Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59009400-59020800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr8:59011000-59031600	Weak transcription	Liver	Liver
3	chr8:59011400-59019000	Weak transcription	Ovary	ovary
4	chr8:59011400-59021000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr8:59011400-59028400	Weak transcription	Placenta	Placenta
6	chr8:59011400-59028800	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr8:59011400-59035400	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr8:59011600-59017600	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr8:59011600-59017600	Weak transcription	Right Atrium	heart
10	chr8:59011600-59020800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr8:59011600-59021000	Weak transcription	Fetal Muscle Trunk	muscle
12	chr8:59011600-59021000	Weak transcription	Lung	lung
13	chr8:59011600-59025400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr8:59011600-59029400	Weak transcription	Adipose Nuclei	Adipose
15	chr8:59011600-59030800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr8:59011600-59031800	Weak transcription	Gastric	stomach
17	chr8:59011600-59044800	Weak transcription	Spleen	Spleen
18	chr8:59011800-59020400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr8:59011800-59020800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr8:59013400-59020800	Weak transcription	Fetal Muscle Leg	muscle
21	chr8:59014600-59021000	Weak transcription	Fetal Stomach	stomach
22	chr8:59014600-59025800	Weak transcription	HSMMtube	muscle
23	chr8:59014800-59019200	Weak transcription	Fetal Lung	lung
24	chr8:59014800-59020800	Weak transcription	HSMM	muscle
25	chr8:59014800-59025000	Weak transcription	NHDF-Ad	bronchial
26	chr8:59014800-59028200	Weak transcription	Rectal Smooth Muscle	rectum
27	chr8:59014800-59034400	Weak transcription	Fetal Brain Female	brain
28	chr8:59015000-59017800	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr8:59015000-59028600	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr8:59015200-59058200	Weak transcription	Aorta	Aorta
31	chr8:59015400-59020200	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr8:59015400-59020800	Weak transcription	Left Ventricle	heart
33	chr8:59015400-59025000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr8:59015400-59036400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr8:59015400-59037000	Weak transcription	Psoas Muscle	Psoas
36	chr8:59015600-59025800	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chr8:59015600-59030000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
38	chr8:59016600-59017600	Weak transcription	Right Ventricle	heart
39	chr8:59016600-59033600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr8:59016600-59046200	Weak transcription	Fetal Brain Male	brain
41	chr8:59016800-59017400	Weak transcription	Fetal Heart	heart
42	chr8:59016800-59029600	Weak transcription	Pancreatic Islets	Pancreatic Islet

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