Variant report

Variant	rs7828726
Chromosome Location	chr8:2104726-2104727
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10093624	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10093737	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10093876	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10094743	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10109232	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10112039	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10112119	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17064772	0.83[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs17064774	0.83[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs17064779	0.83[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs17758377	0.84[ASN][1000 genomes]
rs17831401	0.80[ASN][1000 genomes]
rs1866719	0.90[AMR][1000 genomes]
rs55903327	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7014505	0.83[AMR][1000 genomes]
rs73552747	0.83[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs73657783	0.83[AMR][1000 genomes]
rs7829339	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7829787	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889712	chr8:1591412-2337777	Weak transcription Active TSS Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:2076000-2109600	Weak transcription	Right Atrium	heart
2	chr8:2093000-2107200	Weak transcription	Gastric	stomach
3	chr8:2094000-2122400	Weak transcription	Right Ventricle	heart
4	chr8:2101000-2118000	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr8:2103600-2105200	Enhancers	Primary T cells fromperipheralblood	blood
6	chr8:2103600-2105200	Enhancers	Primary T helper cells PMA-I stimulated	--
7	chr8:2103600-2109600	Weak transcription	Left Ventricle	heart
8	chr8:2103800-2104800	Enhancers	Primary T helper cells fromperipheralblood	blood
9	chr8:2104000-2104800	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
10	chr8:2104200-2104800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr8:2104200-2104800	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr8:2104400-2105400	Active TSS	Pancreas	Pancrea
13	chr8:2104400-2110200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr8:2104400-2110400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr8:2104600-2107200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr8:2104600-2107600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr8:2104600-2107800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr8:2104600-2109400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr8:2104600-2110000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr8:2104600-2110600	Weak transcription	Primary T cells from cord blood	blood
21	chr8:2104600-2110600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr8:2104600-2122200	Weak transcription	Fetal Thymus	thymus

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