Variant report

Variant	rs7831491
Chromosome Location	chr8:49727709-49727710
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:49726188..49729187-chr8:49729418..49731051,2	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11987465	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11991224	0.84[AMR][1000 genomes]
rs16938992	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4075257	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4129251	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs56030902	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs56054521	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs56800165	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73577446	0.81[EUR][1000 genomes]
rs73577471	0.87[AMR][1000 genomes]
rs7464588	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7816893	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526887	chr8:49724699-49729020	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49723200-49730800	Weak transcription	Spleen	Spleen
2	chr8:49724000-49728600	Weak transcription	Fetal Lung	lung
3	chr8:49724400-49730400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr8:49726400-49729800	Enhancers	Muscle Satellite Cultured Cells	--
5	chr8:49726600-49729600	Enhancers	Adipose Nuclei	Adipose
6	chr8:49726800-49727800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr8:49726800-49730600	Weak transcription	Osteobl	bone
8	chr8:49726800-49731200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr8:49727000-49728000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr8:49727000-49728000	Enhancers	Placenta	Placenta
11	chr8:49727000-49728000	Enhancers	Hela-S3	cervix
12	chr8:49727000-49728000	Enhancers	Monocytes-CD14+_RO01746	blood
13	chr8:49727000-49728800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr8:49727000-49730000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr8:49727000-49730000	Enhancers	Pancreas	Pancrea
16	chr8:49727200-49729600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr8:49727400-49730600	Weak transcription	NH-A	brain
18	chr8:49727600-49727800	Enhancers	Esophagus	oesophagus
19	chr8:49727600-49727800	Enhancers	Skeletal Muscle Female	skeletal muscle
20	chr8:49727600-49728000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr8:49727600-49728000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr8:49727600-49728800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr8:49727600-49732600	Weak transcription	Primary monocytes fromperipheralblood	blood

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