Variant report

Variant	rs56054521
Chromosome Location	chr8:49735482-49735483
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:49731173..49733390-chr8:49734247..49736460,2	K562	blood:
2	chr8:49731173..49733186-chr8:49734247..49736203,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11987465	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11991224	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs16938992	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4075257	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4129251	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56030902	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56800165	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73577446	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73577471	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7464588	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7816893	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7831491	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9657079	0.93[EUR][1000 genomes]

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49731000-49740200	Weak transcription	HSMMtube	muscle
2	chr8:49731200-49736000	Weak transcription	NHLF	lung
3	chr8:49731200-49736400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr8:49731200-49736400	Weak transcription	NHDF-Ad	bronchial
5	chr8:49731200-49736600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr8:49731200-49736600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr8:49731200-49736600	Weak transcription	Osteobl	bone
8	chr8:49731200-49738000	Weak transcription	Spleen	Spleen
9	chr8:49731800-49736600	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr8:49731800-49736800	Weak transcription	HSMM	muscle
11	chr8:49731800-49738600	Weak transcription	NH-A	brain
12	chr8:49732800-49736600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr8:49732800-49736800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr8:49733400-49736600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr8:49733800-49736600	Weak transcription	Fetal Lung	lung
16	chr8:49734000-49738600	Weak transcription	Fetal Muscle Leg	muscle
17	chr8:49734000-49748200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr8:49734400-49737600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr8:49734600-49742400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr8:49734600-49747800	Weak transcription	NHEK	skin
21	chr8:49734800-49736600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr8:49734800-49738600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr8:49735000-49735600	Enhancers	Breast Myoepithelial Primary Cells	Breast
24	chr8:49735400-49735600	Weak transcription	Placenta Amnion	Placenta Amnion

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