Variant report

Variant	rs9657079
Chromosome Location	chr8:49753613-49753614
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11987465	0.93[EUR][1000 genomes]
rs11991224	0.84[EUR][1000 genomes]
rs16938992	0.93[EUR][1000 genomes]
rs28506917	1.00[ASN][1000 genomes]
rs28615528	1.00[ASN][1000 genomes]
rs4075257	0.93[EUR][1000 genomes]
rs4129251	0.90[EUR][1000 genomes]
rs56030902	0.93[EUR][1000 genomes]
rs56054521	0.93[EUR][1000 genomes]
rs56800165	0.93[EUR][1000 genomes]
rs73577407	1.00[ASN][1000 genomes]
rs73577428	1.00[ASN][1000 genomes]
rs73577431	1.00[ASN][1000 genomes]
rs73577446	0.90[EUR][1000 genomes]
rs73577471	0.87[EUR][1000 genomes]
rs7464556	1.00[ASN][1000 genomes]
rs7464588	0.84[EUR][1000 genomes]
rs7816893	0.93[EUR][1000 genomes]
rs7819484	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890854	chr8:49738821-49838908	Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49748000-49754600	Weak transcription	Esophagus	oesophagus
2	chr8:49751600-49754600	Weak transcription	Fetal Lung	lung
3	chr8:49752000-49754200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr8:49752000-49758600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr8:49752200-49754400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr8:49752400-49754600	Weak transcription	Brain Germinal Matrix	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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