Variant report

Variant	rs7464556
Chromosome Location	chr8:49762206-49762207
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10087909	1.00[MEX][hapmap]
rs10103620	1.00[MEX][hapmap]
rs1561657	0.96[EUR][1000 genomes]
rs16919006	0.96[EUR][1000 genomes]
rs16938569	1.00[MEX][hapmap]
rs16938743	1.00[MEX][hapmap]
rs16938984	0.96[EUR][1000 genomes]
rs16938987	1.00[MEX][hapmap]
rs16938989	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs16938994	0.96[EUR][1000 genomes]
rs16938996	0.96[EUR][1000 genomes]
rs16939026	0.96[EUR][1000 genomes]
rs16939027	0.96[EUR][1000 genomes]
rs28506917	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs28615528	1.00[ASN][1000 genomes]
rs6472030	1.00[MEX][hapmap]
rs6472036	1.00[MEX][hapmap]
rs6989173	1.00[MEX][hapmap]
rs6999204	1.00[MEX][hapmap]
rs72640548	0.96[EUR][1000 genomes]
rs72640550	0.96[EUR][1000 genomes]
rs72640551	0.96[EUR][1000 genomes]
rs72640555	0.96[EUR][1000 genomes]
rs72640561	0.96[EUR][1000 genomes]
rs72640562	0.96[EUR][1000 genomes]
rs72640563	0.96[EUR][1000 genomes]
rs72640569	0.89[EUR][1000 genomes]
rs73577407	1.00[ASN][1000 genomes]
rs73577428	1.00[ASN][1000 genomes]
rs73577431	1.00[ASN][1000 genomes]
rs7819484	1.00[ASN][1000 genomes]
rs7827154	1.00[MEX][hapmap]
rs9657079	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890854	chr8:49738821-49838908	Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49758600-49766000	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr8:49758800-49764600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr8:49758800-49765200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr8:49761000-49762400	Enhancers	HMEC	breast
5	chr8:49761200-49762400	Enhancers	Fetal Kidney	kidney
6	chr8:49761200-49764200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr8:49761200-49764400	Enhancers	NHEK	skin
8	chr8:49761600-49763800	Weak transcription	Fetal Lung	lung
9	chr8:49761600-49764000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr8:49761800-49762800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr8:49761800-49764000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr8:49762000-49762600	Enhancers	Brain Germinal Matrix	brain
13	chr8:49762000-49763000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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