Variant report

Variant	rs10103620
Chromosome Location	chr8:49611423-49611424
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:49427462..49429762-chr8:49610958..49613280,2	MCF-7	breast:
2	chr8:49608793..49610522-chr8:49611390..49612978,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000253140	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10087585	0.89[AMR][1000 genomes]
rs10087909	1.00[MEX][hapmap]
rs10088320	0.89[AMR][1000 genomes]
rs10095974	0.89[AMR][1000 genomes]
rs10096121	0.89[AMR][1000 genomes]
rs10096124	0.84[AMR][1000 genomes]
rs10110011	0.82[AFR][1000 genomes]
rs10113574	0.93[YRI][hapmap];0.89[AMR][1000 genomes]
rs16938569	0.94[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs16938608	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16938671	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16938732	0.93[YRI][hapmap];0.94[AMR][1000 genomes]
rs16938733	0.89[AMR][1000 genomes]
rs16938743	0.83[LWK][hapmap];1.00[MEX][hapmap];0.84[AMR][1000 genomes]
rs16938987	1.00[MEX][hapmap]
rs2062114	0.84[AMR][1000 genomes]
rs28376220	0.84[AMR][1000 genomes]
rs28478726	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs28489723	0.84[AMR][1000 genomes]
rs28489784	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28498051	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs28549334	0.84[AMR][1000 genomes]
rs28620405	0.89[AMR][1000 genomes]
rs28790665	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs28810807	0.84[AMR][1000 genomes]
rs4582590	1.00[MEX][hapmap]
rs56712301	0.84[AMR][1000 genomes]
rs58148301	0.89[AMR][1000 genomes]
rs6472028	0.93[YRI][hapmap];0.94[AMR][1000 genomes]
rs6472029	0.89[AMR][1000 genomes]
rs6472030	1.00[MEX][hapmap]
rs6472036	1.00[MEX][hapmap]
rs6982290	0.84[AMR][1000 genomes]
rs6989173	0.94[ASW][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];0.93[YRI][hapmap];0.89[AMR][1000 genomes]
rs6999204	1.00[MEX][hapmap]
rs6999874	0.85[AMR][1000 genomes]
rs7003481	0.84[AMR][1000 genomes]
rs7007772	0.84[AMR][1000 genomes]
rs7007937	1.00[AMR][1000 genomes]
rs7011713	0.94[AMR][1000 genomes]
rs73575632	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73575652	0.89[AMR][1000 genomes]
rs73575695	0.84[AMR][1000 genomes]
rs7827154	1.00[MEX][hapmap]
rs7838382	0.89[AMR][1000 genomes]
rs922803	0.80[YRI][hapmap];0.84[AMR][1000 genomes]
rs975744	0.84[AMR][1000 genomes]
rs9773582	0.94[AMR][1000 genomes]

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49595800-49616800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:49605600-49612000	Enhancers	NHEK	skin
3	chr8:49605600-49621000	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr8:49605600-49621800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr8:49605800-49611800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr8:49605800-49621200	Enhancers	HMEC	breast
7	chr8:49606600-49612000	Weak transcription	Pancreas	Pancrea
8	chr8:49606600-49612200	Weak transcription	Left Ventricle	heart
9	chr8:49608200-49611600	Enhancers	Esophagus	oesophagus
10	chr8:49608200-49612400	Weak transcription	Adipose Nuclei	Adipose
11	chr8:49608800-49611600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr8:49609200-49611600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr8:49609200-49611800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr8:49609200-49612000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr8:49609200-49612000	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr8:49609200-49621200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr8:49609800-49612800	Enhancers	Placenta Amnion	Placenta Amnion
18	chr8:49609800-49613200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
19	chr8:49610000-49613000	Enhancers	Fetal Stomach	stomach
20	chr8:49610200-49612000	Weak transcription	Right Atrium	heart
21	chr8:49610600-49612800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr8:49610800-49612000	Weak transcription	Lung	lung
23	chr8:49611000-49613000	Enhancers	Cortex derived primary cultured neurospheres	brain
24	chr8:49611200-49611600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr8:49611200-49611600	Weak transcription	Fetal Kidney	kidney
26	chr8:49611200-49612200	Enhancers	Brain Germinal Matrix	brain
27	chr8:49611200-49612800	Enhancers	Primary hematopoietic stem cells	blood
28	chr8:49611200-49612800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr8:49611200-49612800	Enhancers	Fetal Thymus	thymus
30	chr8:49611200-49613000	Enhancers	Fetal Lung	lung
31	chr8:49611400-49611600	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr8:49611400-49611800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr8:49611400-49611800	Weak transcription	Fetal Muscle Leg	muscle
34	chr8:49611400-49611800	Weak transcription	Placenta	Placenta
35	chr8:49611400-49612400	Enhancers	Fetal Brain Male	brain
36	chr8:49611400-49612600	Enhancers	Fetal Brain Female	brain

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