Variant report

Variant	rs6472028
Chromosome Location	chr8:49676636-49676637
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs10087585	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10087909	1.00[CHB][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10088320	0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10088848	1.00[EUR][1000 genomes]
rs10091785	1.00[EUR][1000 genomes]
rs10093573	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10095974	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10096121	1.00[CHB][hapmap];0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10096124	1.00[CHB][hapmap];0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10103620	0.93[YRI][hapmap];0.94[AMR][1000 genomes]
rs10109962	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10113231	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10113574	1.00[CHB][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10504067	1.00[EUR][1000 genomes]
rs12334368	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12676888	1.00[CHB][hapmap]
rs12679730	0.90[ASN][1000 genomes]
rs16938569	0.93[YRI][hapmap];0.89[AMR][1000 genomes]
rs16938608	0.93[YRI][hapmap];0.94[AMR][1000 genomes]
rs16938671	0.94[YRI][hapmap];0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16938732	1.00[CHB][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16938733	1.00[CHB][hapmap];0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16938743	1.00[CHB][hapmap];0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16938987	1.00[EUR][1000 genomes]
rs16938995	1.00[EUR][1000 genomes]
rs16939033	1.00[EUR][1000 genomes]
rs16939049	1.00[EUR][1000 genomes]
rs2062114	1.00[CHB][hapmap];0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28376220	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28478726	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28489723	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28489784	0.94[AMR][1000 genomes]
rs28498051	0.89[AMR][1000 genomes]
rs28506917	1.00[EUR][1000 genomes]
rs28513268	1.00[EUR][1000 genomes]
rs28537094	1.00[EUR][1000 genomes]
rs28549334	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28615528	1.00[EUR][1000 genomes]
rs28620405	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28636874	1.00[EUR][1000 genomes]
rs28790665	0.89[AMR][1000 genomes]
rs28810807	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56712301	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58148301	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59367437	1.00[EUR][1000 genomes]
rs6472029	1.00[CHB][hapmap];0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6472030	1.00[CHB][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6472036	1.00[CHB][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6982290	1.00[CHB][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6982783	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6989173	1.00[CHB][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6999874	1.00[CHB][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7003481	1.00[CHB][hapmap];0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7007772	1.00[CHB][hapmap];0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7007937	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs7011713	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73575632	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73575652	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73575695	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73575698	0.89[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73575700	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73577412	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73577428	1.00[EUR][1000 genomes]
rs73577431	1.00[EUR][1000 genomes]
rs73577459	1.00[EUR][1000 genomes]
rs73577461	1.00[EUR][1000 genomes]
rs73577462	1.00[EUR][1000 genomes]
rs73577463	1.00[EUR][1000 genomes]
rs73577464	1.00[EUR][1000 genomes]
rs73680733	1.00[EUR][1000 genomes]
rs7460794	1.00[EUR][1000 genomes]
rs7838382	1.00[CHB][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7840259	1.00[CHB][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs922803	1.00[CHB][hapmap];0.87[YRI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs975744	1.00[CHB][hapmap];0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9773582	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9886604	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49671400-49676800	Weak transcription	Right Atrium	heart
2	chr8:49671400-49677000	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr8:49671400-49677400	Weak transcription	Lung	lung
4	chr8:49673800-49677000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr8:49675000-49677600	Enhancers	Colon Smooth Muscle	Colon
6	chr8:49675000-49677600	Enhancers	Ovary	ovary
7	chr8:49675200-49679600	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr8:49675400-49678200	Enhancers	Fetal Stomach	stomach
9	chr8:49675600-49677200	Enhancers	Rectal Smooth Muscle	rectum
10	chr8:49675600-49677400	Enhancers	Fetal Muscle Trunk	muscle
11	chr8:49675600-49677600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr8:49675600-49677600	Enhancers	Adipose Nuclei	Adipose
13	chr8:49675600-49677600	Enhancers	Fetal Brain Male	brain
14	chr8:49675600-49677600	Enhancers	Fetal Lung	lung
15	chr8:49675600-49677600	Enhancers	Fetal Muscle Leg	muscle
16	chr8:49675600-49677800	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr8:49675600-49677800	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr8:49675600-49678000	Enhancers	Placenta Amnion	Placenta Amnion
19	chr8:49675600-49678400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr8:49675600-49678400	Enhancers	Placenta	Placenta
21	chr8:49675600-49678800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr8:49675800-49677000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr8:49675800-49677200	Enhancers	Fetal Brain Female	brain
24	chr8:49675800-49677400	Enhancers	H1 Cell Line	embryonic stem cell
25	chr8:49675800-49677400	Enhancers	HUES48 Cell Line	embryonic stem cell
26	chr8:49675800-49677400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr8:49675800-49677400	Enhancers	Hela-S3	cervix
28	chr8:49675800-49677800	Enhancers	iPS-15b Cell Line	embryonic stem cell
29	chr8:49675800-49677800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr8:49675800-49677800	Enhancers	NHLF	lung
31	chr8:49675800-49678000	Enhancers	NHDF-Ad	bronchial
32	chr8:49675800-49678600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr8:49676000-49677000	Weak transcription	Duodenum Mucosa	Duodenum
34	chr8:49676000-49677200	Weak transcription	Brain Cingulate Gyrus	brain
35	chr8:49676000-49677600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr8:49676000-49677600	Enhancers	HMEC	breast
37	chr8:49676200-49677400	Enhancers	Fetal Kidney	kidney
38	chr8:49676200-49677600	Enhancers	iPS-20b Cell Line	embryonic stem cell
39	chr8:49676200-49677600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
40	chr8:49676200-49677800	Enhancers	iPS-18 Cell Line	embryonic stem cell
41	chr8:49676400-49676800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr8:49676400-49676800	Weak transcription	Skeletal Muscle Male	skeletal muscle
43	chr8:49676400-49677000	Weak transcription	Rectal Mucosa Donor 31	rectum
44	chr8:49676400-49677200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr8:49676400-49677200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr8:49676400-49677200	Enhancers	HSMMtube	muscle
47	chr8:49676400-49677600	Enhancers	HUES64 Cell Line	embryonic stem cell
48	chr8:49676400-49677600	Flanking Active TSS	NHEK	skin
49	chr8:49676600-49676800	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
50	chr8:49676600-49677000	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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